PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537616.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 501aa    MW: 56088.2 Da    PI: 6.6211
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-15269328155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  XP_010537616.1 269 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 328
                     78*******************655454478446*************************98 PP
2AP248.32.4e-15371422155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010537616.1 371 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-12269328IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-17269338IPR016177DNA-binding domain
CDDcd000189.78E-22269338No hitNo description
Gene3DG3DSA:3.30.730.104.2E-16270337IPR001471AP2/ERF domain
SMARTSM003809.9E-30270342IPR001471AP2/ERF domain
PROSITE profilePS5103219.085270336IPR001471AP2/ERF domain
PRINTSPR003671.0E-6271282IPR001471AP2/ERF domain
PfamPF008474.9E-10371422IPR001471AP2/ERF domain
CDDcd000187.34E-25371432No hitNo description
SuperFamilySSF541715.69E-18371432IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-19372430IPR001471AP2/ERF domain
SMARTSM003805.3E-34372436IPR001471AP2/ERF domain
PROSITE profilePS5103219.098372430IPR001471AP2/ERF domain
PRINTSPR003671.0E-6412432IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSKWLGFSLT PHLRLGEEEE EQEHQIDGGD EFSDQPLKTS LMPLRSDGSL FSSDPTSRPL  60
HAWRYDINVN LVGANDGGTN DHVSNVHHHH HEDLLGCCLS SSNPQSQQYH NQADANCTNM  120
FNTNPSDLIL HQQTLVTPHH YPSDPSPRLS YGPFETAGSI SGSKSWLSQG SSSLPLLDIA  180
AEERGNPSID DFTIEEANNN NANGSMLSLT MSRYGDSNEI NGTISDNIGD NVEPLVIKGD  240
DSRKRSIGKS PVKESIPRKS SDSFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK  300
GRQVYLGGYD KEEKAAKAYD LAALKYWGPT THLNFPVSNY EKELEETKSM NRQEFVAMLR  360
RKSSGFSRGA SVYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  420
RGTNAVTNFD ISRYDVKRIC SSSTLIAGDQ AKRSPTNSGG HDHREAAGDS HQHDHDHDHH  480
RQDQDHDHHG ETIPMFALWN A
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537616.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A178WFN21e-175A0A178WFN2_ARATH; Uncharacterized protein
STRINGXP_010537616.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-148AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]