PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 26974 Da PI: 4.6641 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 139.5 | 8.5e-44 | 64 | 165 | 2 | 98 |
NF-YC 2 lksfwekqiekatdf....k.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 l++fw++q+ ++++f k +++lPlar+kki+k+d++vkmisa++P +++kace+file+tlr+w+h+e+ +r t++++d+a+av+r+++fdf XP_010537305.1 64 LEVFWQRQLSEMKNFtggfKsENQLPLARVKKIMKSDPEVKMISADTPPVFAKACEMFILEMTLRAWIHTESRNRDTIQRCDLAEAVKRSETFDF 158 789*****7777665222256899*********************************************************************** PP NF-YC 92 lvdivpr 98 l+d vp XP_010537305.1 159 LIDLVPF 165 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-25 | 82 | 159 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-18 | 87 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.0E-33 | 88 | 164 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKRSFVNDPA FDPNALAKSS RVWMQPPYHG MHNTMPMPEM MLPCYPATSE VDEDYLKQKM 60 GLTLEVFWQR QLSEMKNFTG GFKSENQLPL ARVKKIMKSD PEVKMISADT PPVFAKACEM 120 FILEMTLRAW IHTESRNRDT IQRCDLAEAV KRSETFDFLI DLVPFGPHCV RHQGVDQNAV 180 QEQVGPAATV QPVFPLPNMD PPVNLNPIEQ NLEVPPELLA DSFMTDEPFD LNFDFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 3e-34 | 64 | 164 | 19 | 118 | HapE |
4g92_C | 3e-34 | 64 | 164 | 19 | 118 | HapE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537305.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537295.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537296.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537297.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537300.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537302.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537303.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537304.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537305.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
Refseq | XP_010537306.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit C-10-like | ||||
STRING | XP_010537294.1 | 1e-176 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 2e-57 | nuclear factor Y, subunit C12 |