PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537295.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YC
Protein Properties Length: 236aa    MW: 26974 Da    PI: 4.6641
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC139.58.5e-4464165298
           NF-YC   2 lksfwekqiekatdf....k.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                     l++fw++q+ ++++f    k +++lPlar+kki+k+d++vkmisa++P +++kace+file+tlr+w+h+e+ +r t++++d+a+av+r+++fdf
  XP_010537295.1  64 LEVFWQRQLSEMKNFtggfKsENQLPLARVKKIMKSDPEVKMISADTPPVFAKACEMFILEMTLRAWIHTESRNRDTIQRCDLAEAVKRSETFDF 158
                     789*****7777665222256899*********************************************************************** PP

           NF-YC  92 lvdivpr 98 
                     l+d vp 
  XP_010537295.1 159 LIDLVPF 165
                     *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-2582159IPR009072Histone-fold
PfamPF008086.3E-1887150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-3388164IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKRSFVNDPA FDPNALAKSS RVWMQPPYHG MHNTMPMPEM MLPCYPATSE VDEDYLKQKM  60
GLTLEVFWQR QLSEMKNFTG GFKSENQLPL ARVKKIMKSD PEVKMISADT PPVFAKACEM  120
FILEMTLRAW IHTESRNRDT IQRCDLAEAV KRSETFDFLI DLVPFGPHCV RHQGVDQNAV  180
QEQVGPAATV QPVFPLPNMD PPVNLNPIEQ NLEVPPELLA DSFMTDEPFD LNFDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-346416419118HapE
4g92_C3e-346416419118HapE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537295.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537296.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537297.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537300.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537302.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537303.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537304.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537305.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
RefseqXP_010537306.11e-176PREDICTED: nuclear transcription factor Y subunit C-10-like
STRINGXP_010537294.11e-176(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.12e-57nuclear factor Y, subunit C12