PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531725.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LSD
Protein Properties Length: 153aa    MW: 15796.4 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.4e-133458125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_010531725.1 34 CSGCRNLLLYPVGATSVCCAVCNAV 58
                    ************************9 PP

2zf-LSD146.75.2e-157397125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_010531725.1 73 CGGCHTLLMYIRGATSVQCSCCHTV 97
                    ************************9 PP

3zf-LSD1391.3e-12111135125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C +V
  XP_010531725.1 111 CGNCRMLLMYQYGARSVKCAVCTFV 135
                     **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-123161IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-103458IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.5E-157099IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127397IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-11108136IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-11111135IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPS PPTPYAPPPP PATNGGGGQS QLVCSGCRNL LLYPVGATSV CCAVCNAVTA  60
VPPPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN CGNCRMLLMY  120
QYGARSVKCA VCTFVTPVGA STTTTTSDQK FNI
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531725.11e-106PREDICTED: protein LOL1-like
SwissprotQ93ZB17e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN52e-85A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGXP_010531725.11e-105(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]