PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527538.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 443aa    MW: 49779.6 Da    PI: 5.8357
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.6e-071344334
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                    +r C+ + + +++++C +++ +lC+ C  + H
  XP_010527538.1 13 ARACDSCVKRRARWYCPSDDAFLCQACDGSVH 44
                    578************************99888 PP
2CCT682.6e-23386429144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_010527538.1 386 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 429
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-71158IPR000315B-box-type zinc finger
PROSITE profilePS501199.6271158IPR000315B-box-type zinc finger
PfamPF006431.8E-51345IPR000315B-box-type zinc finger
CDDcd000212.02E-91446No hitNo description
PROSITE profilePS5101716.083386428IPR010402CCT domain
PfamPF062037.5E-18386428IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MKSSANAVGG KTARACDSCV KRRARWYCPS DDAFLCQACD GSVHSANPLA RRPERVRLKS  60
ASSSRTHRPT TVSPPGTAKW HHGFTRKART PRGSGSAGKP NQRAVFFHDL VPEISVEDQT  120
ENYEEEQLIF QVPVLDPTVS EQYRDDAIEE KTGFPLPELI KFADMNEEND EDNAESCLDR  180
FFPTDMELAE FAADVDTLLG HNLETESFAT EDLGLGDGLS VCGRSSSMML KLENEDVHEE  240
ETVAREGTPM ELFYERKGMD MTPFELSFDQ DHSHRAFEEE EEDEEKNVIN VNTGERESVR  300
SGGSSNISHS IKKKNVLMLR LNHEAVISTW GGKGPPWTAG KPPELDLDDN SWHISMGENG  360
NEVPLDRYGG RFCGLGLQAA MMDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR  420
MKGRFVKRAS IASITSSLPL LTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396412RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057014.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-152COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLR0IDF31e-154R0IDF3_9BRAS; Uncharacterized protein
STRINGXP_010527538.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-145B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]