PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526782.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SRS
Protein Properties Length: 307aa    MW: 33191.8 Da    PI: 7.38
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702205.81.2e-63812273154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs.alsstklssaes 96 
                     s t+sC+dCGnqakk+Cah+RCRtCCksrgfdCathv+stW+p+akrrerqqq+ a+      +  ++ +kr+r+ +s+ q   +ss ++     
  XP_010526782.1  81 SVTISCRDCGNQAKKGCAHMRCRTCCKSRGFDCATHVRSTWIPVAKRRERQQQTMAT------EGGANIPKRPRDASSTGQVlYVSSLRIWFVLG 169
                     6789**********************************************9998775......34567899999986555441556677788888 PP

          DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        +   s+P+ev+seavfrcvr+s+vdd++ ++aYqt ++i+GhvfkGiLydqG+++
  XP_010526782.1 170 ALDMGEPSFPAEVNSEAVFRCVRMSGVDDENGQYAYQTMMNINGHVFKGILYDQGPQS 227
                     88999999***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-5883226IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-2685127IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.8E-26178225IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGIFPLGSG RGNEEEDQRK TGLWFRNTNP SASSSDNQQI WQLEQEPPPQ QMFMQQQQQQ  60
SLDLYPAGQI DVSDLATSWR SVTISCRDCG NQAKKGCAHM RCRTCCKSRG FDCATHVRST  120
WIPVAKRRER QQQTMATEGG ANIPKRPRDA SSTGQVLYVS SLRIWFVLGA LDMGEPSFPA  180
EVNSEAVFRC VRMSGVDDEN GQYAYQTMMN INGHVFKGIL YDQGPQSSHN ISCGSGGSDH  240
QSSSAGIGAG GNPFNPAAAA AGASSSHAVA GGSSSPMFVD PSAYYGSSNL SMFMPAGTQF  300
YNQNPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526782.10.0PREDICTED: protein SHI RELATED SEQUENCE 2-like isoform X3
SwissprotO655173e-94SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-104V4ME11_EUTSA; Uncharacterized protein
STRINGXP_010526782.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.13e-77Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]