PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526278.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 306aa MW: 34176.4 Da PI: 8.4132

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	7.8e-54	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k + kewyfF rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_010526278.1 12 LPPGFRFHPTDEELISYYLVNKIADANFTG-KAIADVDLNKSEPWELPAKAKMGGKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 105 79***********************999.88***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e vg+kktLvfy+grap+gekt Wvmheyr+ XP_010526278.1 106 tTSEMVGMKKTLVFYRGRAPRGEKTCWVMHEYRI 139 78888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-62	10	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	12	161	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEGGDQSKEE ALPPGFRFHP TDEELISYYL VNKIADANFT GKAIADVDLN KSEPWELPAK 60 AKMGGKEWYF FNLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNSTTSEM VGMKKTLVFY 120 RGRAPRGEKT CWVMHEYRIH SKSSYRTSKQ DEWVVCRVFK KSEGNRKYTS NNSTRASSTT 180 NPYPEISQNL LPLPPQSIIH PQDQTFNRIL MANTQLAELS RVFRASTSAM HPHLSYQLAG 240 EPTNMPVSGL NLNLGGGAMV QPPAPLEDAG VSGPEMGAGS SFAAEGGFGG VEMNHCMDFD 300 GYWPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	5	167	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	5	167	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	5	167	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	5	167	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	167	9	174	NAC domain-containing protein 19
3swm_B	1e-55	1	167	9	174	NAC domain-containing protein 19
3swm_C	1e-55	1	167	9	174	NAC domain-containing protein 19
3swm_D	1e-55	1	167	9	174	NAC domain-containing protein 19
3swp_A	1e-55	1	167	9	174	NAC domain-containing protein 19
3swp_B	1e-55	1	167	9	174	NAC domain-containing protein 19
3swp_C	1e-55	1	167	9	174	NAC domain-containing protein 19
3swp_D	1e-55	1	167	9	174	NAC domain-containing protein 19
4dul_A	1e-55	5	167	10	171	NAC domain-containing protein 19
4dul_B	1e-55	5	167	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269\|PubMed:10079219, ECO:0000269\|PubMed:10750709, ECO:0000269\|PubMed:11245578, ECO:0000269\|PubMed:12163400, ECO:0000269\|PubMed:12492830, ECO:0000269\|PubMed:12610213, ECO:0000269\|PubMed:12787253, ECO:0000269\|PubMed:14617069, ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15500463, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16798887, ECO:0000269\|PubMed:17122068, ECO:0000269\|PubMed:17287247, ECO:0000269\|PubMed:9212461}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526278.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16854978, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17287247}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526278.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Refseq	XP_010526279.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Swissprot	Q9FRV4	2e-78	NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBL	Q9ZQ25	1e-150	Q9ZQ25_ARATH; NAC domain containing protein 38
STRING	XP_010526278.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-144	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Shinohara N,Ohbayashi I,Sugiyama M Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration. Front Plant Sci, 2014. 5: p. 159 [PMID:24808900] Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014. 5: p. 165 [PMID:24817871] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Cui X, et al. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nat. Genet., 2016. 48(6): p. 694-9 [PMID:27111035] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] González-Carranza ZH, et al. HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS ONE, 2017. 12(9): p. e0185106 [PMID:28934292]