PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525866.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 317aa MW: 35069.3 Da PI: 8.8794

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.6	6.7e-55	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePw+Lp+k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_010525866.1 11 LPPGFRFHPTDEELISYYLMNKIADANFTG-KAIADVDLNKSEPWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 104 79***********************999.88***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_010525866.1 105 tTSELVGMKKTLVFYRGRAPRGEKTSWVMHEYRI 138 78889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	61.133	11	160	IPR003441	NAC domain
Pfam	PF02365	8.0E-29	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEGNQDKGEA LPPGFRFHPT DEELISYYLM NKIADANFTG KAIADVDLNK SEPWELPEKA 60 KMGGKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSTTSELV GMKKTLVFYR 120 GRAPRGEKTS WVMHEYRIHS KSSYRTSRQD EWVVCRVFKK SEGTKKYTTN NHTTRASSTT 180 NPYIEISPNL LPPPPQSLIH SQDHTFNRTL MANAQLAELS RFFRASTSAM AAAGPMGSQQ 240 TLQHQLSYQL AGGPSNLPGS GLNLNLGGAP VPLEDVAVGE PGMGGGGSTS FAVAENGFGG 300 GVEMNHCMDL DGYWPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-56	10	166	19	174	NAC domain-containing protein 19
3swm_B	2e-56	10	166	19	174	NAC domain-containing protein 19
3swm_C	2e-56	10	166	19	174	NAC domain-containing protein 19
3swm_D	2e-56	10	166	19	174	NAC domain-containing protein 19
3swp_A	2e-56	10	166	19	174	NAC domain-containing protein 19
3swp_B	2e-56	10	166	19	174	NAC domain-containing protein 19
3swp_C	2e-56	10	166	19	174	NAC domain-containing protein 19
3swp_D	2e-56	10	166	19	174	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525866.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525866.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A087GRY2	1e-141	A0A087GRY2_ARAAL; Uncharacterized protein
STRING	XP_010525866.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-133	NAC domain containing protein 38