PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525560.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 340aa    MW: 36376.4 Da    PI: 4.9169
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.3e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  + ++C+++  +lC +C ++ H  
  XP_010525560.1  4 KLCDSCKSATAAIYCRQDAAFLCVNCDSKVHAA 36
                    58***************************9954 PP
2zf-B_box24.26.8e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +    C+ +   lC +C   +H+       H++vp+
  XP_010525560.1 46 VWVCEVCEQAPSYVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT66.11e-22275318144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k+a
  XP_010525560.1 275 REARVLRYREKRKNRRFEKTIRYASRKAYAEMRPRIKGRFAKRA 318
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623148IPR000315B-box-type zinc finger
SMARTSM003369.6E-14148IPR000315B-box-type zinc finger
PfamPF006436.9E-6443IPR000315B-box-type zinc finger
CDDcd000214.09E-8548No hitNo description
PROSITE profilePS5011910.4384491IPR000315B-box-type zinc finger
PfamPF006436.2E-64691IPR000315B-box-type zinc finger
CDDcd000212.16E-84791No hitNo description
SMARTSM003362.7E-94991IPR000315B-box-type zinc finger
PfamPF062035.4E-17275317IPR010402CCT domain
PROSITE profilePS5101716.668275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASKLCDSCK SATAAIYCRQ DAAFLCVNCD SKVHAANKLA SRHARVWVCE VCEQAPSYVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFFDVVVG GCSGKPSAAV VNFLDDCYFS  120
DLDGDAGGRE EEEEAASWLL PNPKTAAAED TGQYLFSDSD PYLDLDYGSV DPKMEAEEQN  180
SSGTDGVVPV ENGGVQVATV SENCYELDFS GGSSKAYGYG YSCITQSVSS SSLEVGVVPD  240
GCAIANAANT LSGGAGNNDS GSGSQQAVPL SPAEREARVL RYREKRKNRR FEKTIRYASR  300
KAYAEMRPRI KGRFAKRAKV ETDAESSGGI YCGFSVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLK0226872e-53LK022687.1 Fagus sylvatica partial consC1 gene for constans like, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525560.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-161COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A087GD111e-165A0A087GD11_ARAAL; Uncharacterized protein
STRINGXP_010525560.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-143CONSTANS-like 4