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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG043051t1 | ||||||||
Common Name | TCM_043051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 481aa MW: 52554.3 Da PI: 7.0504 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 168 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Thecc1EG043051t1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 168 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-16 | 168 | 227 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-11 | 169 | 227 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 169 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-32 | 169 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-17 | 169 | 226 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.12E-12 | 260 | 305 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-6 | 260 | 304 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-12 | 261 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MLDLNLDVVS CESSCDENKM LMNGDKLPGG VTLTHMEDSG STNSSIINAE EVPSNAGDEN 60 SSNNDASALI FDILKKETDE TTTTTITTNA EKVENPSPDF VTRQLFPVTG EKGGLELEFR 120 ASFGTKSSAR PQWLNLSYAE ASREAELKTV PLKPQPRKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSEYE EEMKQMKNMS 240 KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDMAA MKCNGREAVT 300 NFDPSTYEGE ITNSLGGSSH NLDLSLGISA PSVAQNASSN AGDFHFQHAA SARERPVFES 360 SAPTSTGVEP QHGLTIGSKH PPILSGVYPG LLPNNEERGM EKRIEAVSTT RFSNWAWQMQ 420 GNGNITATPV IPIAASSGFS SSSATALSTA FPFSNSVQNV CLLTPATSPN NNSYYFSYRS 480 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007009698.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 3e-99 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A061FNN0 | 0.0 | A0A061FNN0_THECC; Ethylene-responsive transcription factor RAP2-7, putative isoform 1 | ||||
STRING | EOY18508 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16464 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 4e-90 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG043051t1 |
Entrez Gene | 18586321 |
Publications ? help Back to Top | |||
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