PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042116t1

Common Name

TCM_042116

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 332aa MW: 35991.4 Da PI: 9.3038

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042116t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.2	4.3e-32	171	238	6	66
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 ++++++h+kv+gRdRR+Rl+ caar+F+L++eLG+++d++ti WLl+qa+p+i+++tgt + Thecc1EG042116t1 171 KTTKDRHAKVDGRDRRIRLPPVCAARIFQLTRELGYKTDGETIAWLLRQAEPSIIAATGTgisspgsT 238 689*********************************************************55444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-26	172	231	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.832	173	227	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAAGRGCTRL PPHFHLCFFA KKFCVSSCLK QNGCLRALAQ MNSSSSAATV PCRPLSSLPS 60 GFHKRMEEDS CMEKRKERKD SLRVEEGLRY AIKSGISGAN QARVCSNTTQ KMGTSPPIIH 120 LRVDFSSMCD ILMASENMGL EMALPNPSTR KPRPFSQKKP SSSKSKLVTC KTTKDRHAKV 180 DGRDRRIRLP PVCAARIFQL TRELGYKTDG ETIAWLLRQA EPSIIAATGT GISSPGSTTP 240 PALSTPTTGL APFSSGPLLF SSDCSPSLTF CEPKVVSENQ DVVKRSVVSR AEPVLPPFEF 300 DLVTNFDLEF SANEIAMLQS VTGTHGTEGK D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279343.1	0.0	LOW QUALITY PROTEIN: transcription factor TCP14-like
TrEMBL	A0A061H0A3	0.0	A0A061H0A3_THECC; Transcription factor-like protein
STRING	EOY34434	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	2e-25	TCP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042116t1
Entrez Gene	18590926

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]