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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042000t2 | ||||||||
Common Name | TCM_042000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 481aa MW: 52507.9 Da PI: 6.514 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Thecc1EG042000t2 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 153 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 153 | 211 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.72E-11 | 154 | 212 | No hit | No description |
PROSITE profile | PS51032 | 17.622 | 154 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-33 | 154 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-17 | 154 | 210 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-12 | 245 | 288 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-6 | 245 | 288 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-12 | 246 | 294 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MLDLNLNAAS TESTQDCDSA APFSDNLNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD 60 AFTLSFDILK VGSRGSEYQN DDAAKVVTKE LFPVKGVGGD FGSCEGQSSG NGDNNKWIDL 120 SFERKEAGEP RVMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVEADINFT LSDYEEDMKQ MKNLTKEEFV HILRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPR SYEGEMTFDT 300 SNEDALYPGN DHNLDLNLGI SPPVGNGPKE NEGHLHFHTG PYDVHGAKSL RAENPAAATV 360 GGPPFKGPVG PSDQPIFWNS GYPRFFPSEE RAMVNRVELG PPQGLPDWAW QTHGQVSVTP 420 MPLFSTAASS GFSFSATPRS AAILPSKPLD PTTHSLCFAS PAATNTPQTY FHIKPPQAPP 480 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016647.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X3 | ||||
Swissprot | Q9SK03 | 1e-138 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A061GXS9 | 0.0 | A0A061GXS9_THECC; AP2.7 isoform 2 | ||||
STRING | EOY34265 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-128 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042000t2 |
Entrez Gene | 18590830 |
Publications ? help Back to Top | |||
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