PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041235t1

Common Name

TCM_041235

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TALE

Protein Properties

Length: 733aa MW: 79446.6 Da PI: 7.8577

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041235t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	425	462	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Thecc1EG041235t1 425 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 462 554459******************************88 PP
2	BELL	122.5	1.7e-39	289	360	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q+v+ssFe++ag g+a++Yt+lAl++iS++FrcLkdai++qi Thecc1EG041235t1 289 QRQELQMKKAKLVSMLDEVEQRYRQYHHQMQIVVSSFEQAAGFGAARSYTALALQTISKQFRCLKDAISGQI 360 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-65	216	358	IPR006563	POX domain
Pfam	PF07526	3.2E-50	221	357	IPR006563	POX domain
PROSITE profile	PS50071	12.131	403	466	IPR001356	Homeobox domain
SMART	SM00389	2.3E-9	406	470	IPR001356	Homeobox domain
CDD	cd00086	2.15E-12	406	467	No hit	No description
SuperFamily	SSF46689	8.13E-17	407	472	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-29	409	472	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-18	423	462	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MATYFHGSSE FQAASAAAPD GTMQTLYLMN PNYVPYSDTH QPAAATNMFF LNPAGNALNP 60 TSLHHAPPPN HHHLLGLPLP TPAASIGPGS SDDPHRPSLH GIVSGVHYNL WGPNIDHQNS 120 PGSSHAQVVS AAAAAAANSG GAHDVASQLG LRRPVASPRQ GLSLSLSSQQ QVTYRSSNVE 180 TDIQGQSQVP TISLADDMRI SGNSPSSVSV VSNGISGVQS VVLGSKYLRA AQELLDEVVN 240 VGKGIKTDVS EGTKEKIKMN KESIAAVTGE GSSAGENGAK RGAELTTAQR QELQMKKAKL 300 VSMLDEVEQR YRQYHHQMQI VVSSFEQAAG FGAARSYTAL ALQTISKQFR CLKDAISGQI 360 KATSKSLGEE DCLGAKVEGS RLRFVDHQLR QQRALQQLGM MQHNAWRPQR GLPERAVSVL 420 RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEVKERE 480 RNGSEENGNK SEQKESGSSS SAQQESAALK MDQVKTQSKP DKSINQNTSP TEFSNSTIST 540 SPMGGSLLPQ TAFNLIGSSD LDGTAARRSP KKPRGINDMH NSPSSILSMD MDMKQGETRE 600 INIKFGEERL SKDSYSLLTG TANHGGGFGT YSTMGEIGRF DPEQLTPRFP GNSVSLTLGL 660 PHCDNLSLSG NQQNFLSNQN IQLGRRLELG PSESDFCGIN NQQASHSSTG YENIEMQNRK 720 RFAAQLLPDF VA*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MATYFHGSSE FQAASAAAPD GTMQTLYLMN PNYVPYSDTH QPAAATNMFF LNPAGNALNP  60
TSLHHAPPPN HHHLLGLPLP TPAASIGPGS SDDPHRPSLH GIVSGVHYNL WGPNIDHQNS  120
PGSSHAQVVS AAAAAAANSG GAHDVASQLG LRRPVASPRQ GLSLSLSSQQ QVTYRSSNVE  180
TDIQGQSQVP TISLADDMRI SGNSPSSVSV VSNGISGVQS VVLGSKYLRA AQELLDEVVN  240
VGKGIKTDVS EGTKEKIKMN KESIAAVTGE GSSAGENGAK RGAELTTAQR QELQMKKAKL  300
VSMLDEVEQR YRQYHHQMQI VVSSFEQAAG FGAARSYTAL ALQTISKQFR CLKDAISGQI  360
KATSKSLGEE DCLGAKVEGS RLRFVDHQLR QQRALQQLGM MQHNAWRPQR GLPERAVSVL  420
RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEVKERE  480
RNGSEENGNK SEQKESGSSS SAQQESAALK MDQVKTQSKP DKSINQNTSP TEFSNSTIST  540
SPMGGSLLPQ TAFNLIGSSD LDGTAARRSP KKPRGINDMH NSPSSILSMD MDMKQGETRE  600
INIKFGEERL SKDSYSLLTG TANHGGGFGT YSTMGEIGRF DPEQLTPRFP GNSVSLTLGL  660
PHCDNLSLSG NQQNFLSNQN IQLGRRLELG PSESDFCGIN NQQASHSSTG YENIEMQNRK  720
RFAAQLLPDF VA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	412	470	5	63	Homeobox protein Meis2
3k2a_B	1e-16	412	470	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015671.2	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A061GTY0	0.0	A0A061GTY0_THECC; BEL1 homeodomain 1, putative
STRING	EOY33290	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16274	5	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-123	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Thecc1EG041235t1
Entrez Gene	18590208

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]