PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG039203t1
Common NameTCM_039203
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 548aa    MW: 59148.6 Da    PI: 6.931
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG039203t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15181240155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Thecc1EG039203t1 181 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 240
                       57*******************666664477446*************************98 PP
2AP247.15.8e-15283334155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Thecc1EG039203t1 283 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 334
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-22181250No hitNo description
SuperFamilySSF541711.5E-17181250IPR016177DNA-binding domain
PfamPF008473.2E-12181240IPR001471AP2/ERF domain
PROSITE profilePS5103219.23182248IPR001471AP2/ERF domain
SMARTSM003807.3E-30182254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-16182249IPR001471AP2/ERF domain
PRINTSPR003672.4E-6183194IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18283344IPR016177DNA-binding domain
CDDcd000181.86E-24283344No hitNo description
PfamPF008477.2E-10283334IPR001471AP2/ERF domain
PROSITE profilePS5103219.045284342IPR001471AP2/ERF domain
SMARTSM003801.5E-33284348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18284343IPR001471AP2/ERF domain
PRINTSPR003672.4E-6324344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDMSMGNMDS SSTQNWLAFS LSNQQQQHLN LPTSSSSSHH SSHLCLFEAF TTPNPTAPTS  60
TINSSALEED AAASGTTTAG ATDLSMFRGG PKLEDFLGGS STTTGAGDAP HPHFSAETPV  120
TVSDTEIYDS ELKTIAASFL RGFSSEQTDT HKQQQQQQQQ LVPTAEPAPR RAVDTFGQRT  180
SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG  240
PTTTTNFPIS NYEKELGEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  300
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPIGG  360
LSNKSKNCSD SASDGKSTDD DRDHSSASSA VTFASQPAPS SALSFAVPIK QDPSDYWSNI  420
FGYNNTAASL SSAKNPSVAP TLFHQSSNNG SAFQDPSAFS MAFGVNSLVN ESSNGLFNGG  480
GYVQQQSGVS TSTSSLPLAT PTALNNSGNN NYESSSGYGS WIAQSLHSYQ TAKPSLSVFQ  540
TPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014251.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-170AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU40.0A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGEOY318700.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-150AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]