PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038442t1
Common NameTCM_038442
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 352aa    MW: 39880.1 Da    PI: 7.8912
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038442t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.8e-1246102155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d +++n  ++k+ + g ++ +e Aa a++ a++k++g
  Thecc1EG038442t1  46 SIYRGVTRHRWTGRYEAHLWDkYCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 102
                       57***********************9998888888********************98 PP
2AP251.33e-16145196155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Thecc1EG038442t1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-846102IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1546112IPR016177DNA-binding domain
PROSITE profilePS5103218.28147110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-1247111IPR001471AP2/ERF domain
SMARTSM003801.7E-1847116IPR001471AP2/ERF domain
PRINTSPR003673.9E-64859IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18145206IPR016177DNA-binding domain
PfamPF008475.5E-12145196IPR001471AP2/ERF domain
CDDcd000183.26E-24145206No hitNo description
PROSITE profilePS5103218.334146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17146205IPR001471AP2/ERF domain
SMARTSM003801.2E-24146210IPR001471AP2/ERF domain
PRINTSPR003673.9E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKLSLQNQK NNAQNNNFNN TTSNGVTKVK RTRRSVPRDS PPQRSSIYRG VTRHRWTGRY  60
EAHLWDKYCW NESQNKKGRQ GAYDDEEAAA HAYDLAALKY WGQDTILNFS LSTYQKELKE  120
MEDQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLKPNQTNTE SNPNPKIEST STVTTSPTQE  240
LNLNFVNNNQ LQASNPSDQS LLTQPRPVNA TSALGLLLQS SKFKEMMEMT SAADHCQLTP  300
AVSEPVPCSF PEDIQTYFGC QDSSSYGDVD DIIFGELNSF MPPMFQCDFD A*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983324.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-114AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A061GQS80.0A0A061GQS8_THECC; AP2 domain-containing transcription factor
STRINGEOY315220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]