PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036860t1
Common NameTCM_036860
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 336aa    MW: 37036.3 Da    PI: 6.7209
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036860t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.81.3e-09444438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      + C+ +++  ++lfC+ ++ +lC +C +++H        H+
  Thecc1EG036860t1  4 KLCDSCKSATATLFCRADSAFLCSNCDSKIHAAnklasrHS 44
                      68*****************************6556666676 PP
2zf-B_box28.23.8e-094591242
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Thecc1EG036860t1 45 RVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                      6789*****************************66899999*99986 PP
3CCT69.68.2e-24272315144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Thecc1EG036860t1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRS 315
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.865148IPR000315B-box-type zinc finger
SMARTSM003363.5E-14148IPR000315B-box-type zinc finger
PfamPF006435.2E-7444IPR000315B-box-type zinc finger
CDDcd000211.90E-9548No hitNo description
PROSITE profilePS5011910.9784491IPR000315B-box-type zinc finger
PfamPF006431.8E-74591IPR000315B-box-type zinc finger
CDDcd000217.84E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658272314IPR010402CCT domain
PfamPF062031.4E-17272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCSNCD SKIHAANKLA SRHSRVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVNS VPAVKPNGVV NFLDERYFSE  120
VDGDADVSRE EAEAASWLLP NPNHKAVESP DVNTGQYVFS EMDPYLDLDY GHVDPKMEAQ  180
EQNSSGTDGV VPVQSKSVQA PMVNDHCFDL DFTGSKPFAY GYNAHCVSHS VSSSSLDVGV  240
VPDGSAMTDI SNPYGRGAES THQTVQLSSA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AEMRPRIKGR FAKRSDIEVE ADRRNMYGFG VVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983683.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-156COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A061GJE10.0A0A061GJE1_THECC; CONSTANS-like 4
STRINGEOY292670.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-152CONSTANS-like 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]