PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036791t1

Common Name

TCM_036791

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 333aa MW: 37357.3 Da PI: 9.4164

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036791t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.2e-55	25	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ Thecc1EG036791t1 25 LPPGFRFHPTDEELITYYLVNKISDASFTG-RAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIF 116 79***********************999.89***********99999************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ Thecc1EG036791t1 117 NSvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 152 9989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	22	174	IPR003441	NAC domain
PROSITE profile	PS51005	61.367	25	174	IPR003441	NAC domain
Pfam	PF02365	8.8E-29	26	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEQSVGKKKS LKEMAMEGQG KEETLPPGFR FHPTDEELIT YYLVNKISDA SFTGRAIADV 60 DLNKCEPWDL PGKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNTGYWKTTG KDKEIFNSVT 120 SELVGMKKTL VFYRGRAPRG EKTNWVMHEY RIHSKSSFRT TKQDEWVVCR VFQKSAGVKK 180 YPSNQSRAVN PYNLEIGASV MPPAMMQAEN YQFSMGRNYA ELAELSRVLR GGPSTTVNLP 240 IQSQINYPGG FTISGLNLNL GGASTQQVIR PMQPPPPPAT HQQDVTATMM SATSFTAENG 300 YGTAELNNAN GPSNRFLSMD HCMDLDNYWA TY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	24	180	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	24	180	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	24	180	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	24	180	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	24	180	19	174	NAC domain-containing protein 19
3swm_B	2e-57	24	180	19	174	NAC domain-containing protein 19
3swm_C	2e-57	24	180	19	174	NAC domain-containing protein 19
3swm_D	2e-57	24	180	19	174	NAC domain-containing protein 19
3swp_A	2e-57	24	180	19	174	NAC domain-containing protein 19
3swp_B	2e-57	24	180	19	174	NAC domain-containing protein 19
3swp_C	2e-57	24	180	19	174	NAC domain-containing protein 19
3swp_D	2e-57	24	180	19	174	NAC domain-containing protein 19
4dul_A	2e-57	24	180	16	171	NAC domain-containing protein 19
4dul_B	2e-57	24	180	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983483.1	0.0	PREDICTED: NAC domain-containing protein 100
TrEMBL	A0A061GJ70	0.0	A0A061GJ70_THECC; NAC domain containing protein 38
STRING	EOY29157	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-120	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Thecc1EG036791t1
Entrez Gene	18587599

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]