PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036568t1 | ||||||||
Common Name | TCM_036568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23170.8 Da PI: 10.026 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.6 | 5.2e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA ELSvLCdae+ v+ifs +gklye + Thecc1EG036568t1 9 KRIENPVHRQVTFCKRRAGLLKKARELSVLCDAEIGVVIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 48.3 | 4.3e-17 | 88 | 159 | 16 | 87 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + ++e++ Lk+eie Lq+ +R + G + e ++l eL Le++Le + +iRs K+++l+++i+ l++k++++ Thecc1EG036568t1 88 EAKKEIDMLKQEIEILQKGLRYMFGGGSEIMTLDELVVLEKHLEIWIYHIRSAKMDILFQEIQMLRNKNNAQ 159 5789****************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-28 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.702 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.48E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 5.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.888 | 86 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-16 | 89 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MARGRVQMKR IENPVHRQVT FCKRRAGLLK KARELSVLCD AEIGVVIFSA HGKLYELATK 60 GTMQGLIERY TNYNGGTPPD EAIAEPIEAK KEIDMLKQEI EILQKGLRYM FGGGSEIMTL 120 DELVVLEKHL EIWIYHIRSA KMDILFQEIQ MLRNKNNAQR PFSAQQSLKS ASSNGNLLPV 180 SKHRYHNADF QTSATNHKHR VNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-18 | 1 | 96 | 1 | 85 | MEF2C |
5f28_B | 9e-18 | 1 | 96 | 1 | 85 | MEF2C |
5f28_C | 9e-18 | 1 | 96 | 1 | 85 | MEF2C |
5f28_D | 9e-18 | 1 | 96 | 1 | 85 | MEF2C |
6byy_A | 8e-18 | 1 | 96 | 1 | 85 | MEF2 CHIMERA |
6byy_B | 8e-18 | 1 | 96 | 1 | 85 | MEF2 CHIMERA |
6byy_C | 8e-18 | 1 | 96 | 1 | 85 | MEF2 CHIMERA |
6byy_D | 8e-18 | 1 | 96 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099142 | 9e-61 | BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980923.1 | 1e-113 | PREDICTED: agamous-like MADS-box protein AGL12 | ||||
Swissprot | A2YQK9 | 5e-65 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 5e-65 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A061FS94 | 1e-151 | A0A061FS94_THECC; Agamous-like MADS-box protein A | ||||
STRING | EOY17404 | 1e-151 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7052 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-62 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036568t1 |
Entrez Gene | 18593078 |
Publications ? help Back to Top | |||
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