PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036224t1
Common NameTCM_036224
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 205aa    MW: 22304.2 Da    PI: 6.5094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036224t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-1763112255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +ykGVr+++ +g+Wv+eIr+p   g +  r +lg++ t+e+Aa a++ a  +l+ 
  Thecc1EG036224t1  63 KYKGVRRRR-WGKWVSEIRVP---G-TqERLWLGSYSTPEGAAIAHDIAHYCLRR 112
                       8*****777.**********8...3.35*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-2462123IPR001471AP2/ERF domain
PROSITE profilePS5103221.07463122IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1663122IPR016177DNA-binding domain
SMARTSM003801.7E-2463128IPR001471AP2/ERF domain
PfamPF008476.5E-963111IPR001471AP2/ERF domain
CDDcd000181.52E-2563122No hitNo description
PRINTSPR003673.9E-86475IPR001471AP2/ERF domain
PRINTSPR003673.9E-886102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVKSYPFSLP LTFCFFNLYS LYFPSPVFNR GSTFCSIASS LSCVSCALEK TMSAAAVEES  60
SRKYKGVRRR RWGKWVSEIR VPGTQERLWL GSYSTPEGAA IAHDIAHYCL RRPSSLNGLN  120
FPSMVPPNLN VNMSPKSVQK AASDAGMAVD AQMIVISNET KASENSGVIV GMETESWEND  180
SSGSWEGSVG KEGEALSISV EDYL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021288332.11e-136ethylene-responsive transcription factor ERF020, partial
SwissprotQ9C9I85e-46ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A061FRA91e-148A0A061FRA9_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY170691e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-48ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]