PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034757t1

Common Name

TCM_034757

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MIKC_MADS

Protein Properties

Length: 334aa MW: 37593.5 Da PI: 5.3056

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034757t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.4	3.4e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++vav++fs++g++ +s Thecc1EG034757t1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVAVMMFSPSGRVSLFS 58 79*******************************************98776 PP
2	K-box	20.3	2.2e-08	109	170	9	70
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++ e+ qqe+ k k++i +++ +R + G+ e +l + + eq Le+ lk++R +K+ Thecc1EG034757t1 109 STDSQLEEFQQEILKCKSRIVDMEKRLRVFEGDPFEITTLCQAEFHEQILEETLKQVRLRKQ 170 68899**************************9988888888888************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.352	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.6E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.88E-37	2	75	No hit	No description
SuperFamily	SSF55455	7.46E-30	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-25	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVAVMMFSP SGRVSLFSGN 60 KSIEEILGRY VNLPEHERGR LRHKEFLLKA LGKLRDEADQ TCQAASPVST DSQLEEFQQE 120 ILKCKSRIVD MEKRLRVFEG DPFEITTLCQ AEFHEQILEE TLKQVRLRKQ VLQEKYSSPG 180 PPPTTQVHLP PETADVNGFV TGSSSSILEW IPQRDPQIQI LNFLGSNGLL RPRDQSQPGA 240 ENILPPPQST LLRGEEINVD DQLSPRSGLE NDNIVQRPEF GQVVDVNLSP WTELYPTGDD 300 SFPDAQPGGR ALLELYLSQF TPSSISTMNQ HQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6byy_A	1e-15	1	80	1	79	MEF2 CHIMERA
6byy_B	1e-15	1	80	1	79	MEF2 CHIMERA
6byy_C	1e-15	1	80	1	79	MEF2 CHIMERA
6byy_D	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_A	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_B	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_C	1e-15	1	80	1	79	MEF2 CHIMERA
6bz1_D	1e-15	1	80	1	79	MEF2 CHIMERA
6c9l_A	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	1	80	1	79	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018574.2	0.0	PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
Swissprot	Q1PFC2	4e-52	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	A0A061FMR3	0.0	A0A061FMR3_THECC; AGAMOUS-like 104
STRING	EOY15799	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16199	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	2e-54	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Thecc1EG034757t1
Entrez Gene	18592030

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]