PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034142t1

Common Name

TCM_034142

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 307aa MW: 33907.4 Da PI: 7.6287

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034142t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227	3.4e-70	86	243	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsa 85 r+g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpa+krrerqqqlaa+++++++++ + +++kr+r +++ + + Thecc1EG034142t1 86 RQGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQQLAALQQQQQQQQnqqqeqqqfRGENPKRQR--ENQGAPS 176 7899***************************************************998887776544443322222222222..3456667 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l++t+ls ++ + le ++P+ev+s+avfrcv+vs++dd++ee+aYqtav+i+GhvfkGiLydqG+e+ Thecc1EG034142t1 177 LACTRLSPTT--SGLELGQYPPEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIAGHVFKGILYDQGPES 243 7777777766..5588899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.4E-68	89	242	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.6E-27	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.7E-26	194	241	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGFFYLGGR EGAAASKQEG EDKEENLYLY RNEEIYNKGF ELWPQYYYQQ QNVNNYSFGA 60 GPSRRTSGFN LSDESSSRSA GFTVMRQGGM NCQDCGNQAK KDCTHLRCRT CCKSRGFQCQ 120 THVKSTWVPA SKRRERQQQL AALQQQQQQQ QNQQQEQQQF RGENPKRQRE NQGAPSLACT 180 RLSPTTSGLE LGQYPPEVNS PAVFRCVKVS AMDDADEEFA YQTAVNIAGH VFKGILYDQG 240 PESRYTSGGE SSQPLDLITA ATTAAATTTT ATTSSNPGTS MLDPSLYPAP LNAFIAGTQF 300 FPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616053	3e-61	JX616053.1 Gossypium hirsutum clone NBRI_GE60429 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017677.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-101	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A061FDV1	0.0	A0A061FDV1_THECC; SHI-related sequence 7, putative
STRING	EOY14902	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-87	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG034142t1
Entrez Gene	18591477

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]