PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029628t1

Common Name

TCM_029628

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BES1

Protein Properties

Length: 328aa MW: 35159.9 Da PI: 8.651

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029628t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	217.7	2.7e-67	2	146	1	149
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++++++g sasasp+ss Thecc1EG029628t1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIVGGSASASPCSS 94 5899*************************************************************************************** PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsss 149 ++ +sp++sy++sp+sssfpsp+s+ +s+a+ +sl+p+l++l+++sss Thecc1EG029628t1 95 YH--------PSPCASYNPSPASSSFPSPASSHYTSNANGngdaNSLIPWLKNLTSSSSS 146 ........******************999998877688999******9887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.9E-68	3	140	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKGCKPVDRM DIVGGSASAS PCSSYHPSPC ASYNPSPASS SFPSPASSHY 120 TSNANGNGDA NSLIPWLKNL TSSSSSASSK LAHHLYIAGG SISAPVTPPL SSPTSRTPRT 180 RNEWDERTAA SAWAGQRYSY LPSSTPPSPS RQGFPDSGWL SRLEIPQSGP TSPTFSLVSR 240 NPFGFKDETL SGGGSRMWTP GQSGTCSPAF PAGVDQTSDV PMSDAIAAEF AFGSNVTGLV 300 KPWEGEKIHE ECVADDLELT LGNSKTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	7e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	7e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	7e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	7e-24	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025289.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_017978924.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4 isoform X2
Swissprot	Q9ZV88	1e-138	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A061GE96	0.0	A0A061GE96_THECC; BES1/BZR1
STRING	EOY27911	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-106	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Thecc1EG029628t1
Entrez Gene	18596626

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]