PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029127t1
Common NameTCM_029127
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 581aa    MW: 64091 Da    PI: 6.3704
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029127t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.6e-15259318155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Thecc1EG029127t1 259 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 318
                       78*******************655454478446*************************98 PP
2AP248.13e-15361412155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Thecc1EG029127t1 361 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 412
                       78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-12259318IPR001471AP2/ERF domain
CDDcd000181.22E-21259328No hitNo description
SuperFamilySSF541713.86E-17259328IPR016177DNA-binding domain
SMARTSM003801.1E-29260332IPR001471AP2/ERF domain
PROSITE profilePS5103219.177260326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-16260327IPR001471AP2/ERF domain
PRINTSPR003671.3E-6261272IPR001471AP2/ERF domain
PfamPF008475.9E-10361412IPR001471AP2/ERF domain
CDDcd000181.42E-24361422No hitNo description
SuperFamilySSF541719.15E-18361422IPR016177DNA-binding domain
SMARTSM003803.6E-34362426IPR001471AP2/ERF domain
PROSITE profilePS5103219.006362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18362420IPR001471AP2/ERF domain
PRINTSPR003671.3E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDESFG REDHGGFSSV MPLRSDGSLY VVDPFRRSSN GAEDWRYENI  60
GGATESEDGP KLEDFLGCCY SNSPSEETKV YGQTQEDSNE NIVSTRINVN VAPSYNTNGD  120
MEGGETLTNP SSLIQTYQYN ENRQTLMASD NLQQCDPNPN HNHNNGMNHV PFESATSVSG  180
FKSWLRQTPF SDGKASSEAS NHCNFQTLSL TMTPSSQNGT MAAIAPLEGV DNRKRPVGKS  240
LAREPVPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD  300
KEEKAARAYD LAALKYWGPT THINFPLSTY EKELEEMKNM TRQEFVAHLR RKSSGFSRGA  360
SVYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGTSAVTNFD  420
ISRYDVKRIC SSSTLIGGDL AKRSPKDSGP IALEDYNSCS SSTSAHPLLA ISNGEASHEV  480
ADMVWNANSD DNQQHQGSNT NNDASLATSN GRNSSNPQSP KCSVGLASEF GIGGDYSQGY  540
FSLEGPKFED GSNGTENSNE NRLGSLGVVH QVPMFALWNE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024618.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-148AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL40.0A0A061GBL4_THECC; AP2 domain-containing transcription factor
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-145AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]