PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG028767t1

Common Name

TCM_028767

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 754aa MW: 83174.1 Da PI: 6.018

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028767t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Thecc1EG028767t1 98 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	START	233.6	5.4e-73	269	491	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ++a++el k+a+a+ep+Wv+s+ e++n+de++++f+ +++ +s+ea+r++gvv+ +l++lv++++d++ qW+e+++ k++t Thecc1EG028767t1 269 VNQATEELKKMATASEPLWVRSVetgrEILNYDEYVKEFSVENSsngrpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPclvsKVAT 360 578999*******************************8888899***************************.*********** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 ++vi++g ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kvtwv Thecc1EG028767t1 361 VDVICNGeapnrnGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVTWV 452 *********************************************************98.9************************ PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh +++++++h ++r +v+sgla+ga++w+atlq qce+ Thecc1EG028767t1 453 EHLECQKSTVHTMYRTVVSSGLAFGARHWMATLQLQCER 491 ***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-23	84	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-20	88	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.22	95	155	IPR001356	Homeobox domain
SMART	SM00389	8.3E-19	97	159	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	98	153	IPR001356	Homeobox domain
CDD	cd00086	4.34E-17	102	153	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.795	258	494	IPR002913	START domain
SuperFamily	SSF55961	1.17E-34	260	491	No hit	No description
CDD	cd08875	1.25E-113	262	490	No hit	No description
Gene3D	G3DSA:3.30.530.20	3.7E-7	264	484	IPR023393	START-like domain
SMART	SM00234	1.1E-75	267	491	IPR002913	START domain
Pfam	PF01852	1.5E-58	268	491	IPR002913	START domain
SuperFamily	SSF55961	1.07E-14	521	741	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MGVDMSNPPT KDFFASPALS LSLAGIFRDA GAAAAAAAAN MEVEEGDEGS GGGGSGKREE 60 TVEISSENSG PARSRSEDDL LEHDDEEDDG DKSKKKKRKK YHRHTAEQIR EMEALFKESP 120 HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKHELDK LRDDNKAMRE 180 TINKACCPNC GMATTSKDGS VTTEEQQLRI ENAKLKAEVE KLRAAIGKYA PGAASTSSCS 240 AGNDQENRSS LDFYTGIFGL EKSRIMEIVN QATEELKKMA TASEPLWVRS VETGREILNY 300 DEYVKEFSVE NSSNGRPKRS IEASRETGVV FVDLPRLVQS FMDVNQWKEM FPCLVSKVAT 360 VDVICNGEAP NRNGAVQLMF AELQMLTPLV PTREVYFVRY CKQLSAEQWA IVDVSIDKVE 420 ENIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHTMYRTVV SSGLAFGARH 480 WMATLQLQCE RLVFFMATNV PTKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSYNTW 540 NKVPSKTGED IRVSSRKNLN DPGEPLGVIV CAVSSVWLPV SPNALFDFLR DEAHRNEWDI 600 MSNGGPVQSI ANLAKGQDRG NAVTIQAMKS KENSMWVLQD SCTNAFESMV IFAPVDIAGM 660 QSVITGCDSS NMAILPSGFS ILPDGLESRP LVITSRQEKS NDTEGGSLLT IAFQILTNSS 720 PTAKLTMESV ESVNTLISCT LRNIKTSLQC EDG*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MGVDMSNPPT KDFFASPALS LSLAGIFRDA GAAAAAAAAN MEVEEGDEGS GGGGSGKREE  60
TVEISSENSG PARSRSEDDL LEHDDEEDDG DKSKKKKRKK YHRHTAEQIR EMEALFKESP  120
HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKHELDK LRDDNKAMRE  180
TINKACCPNC GMATTSKDGS VTTEEQQLRI ENAKLKAEVE KLRAAIGKYA PGAASTSSCS  240
AGNDQENRSS LDFYTGIFGL EKSRIMEIVN QATEELKKMA TASEPLWVRS VETGREILNY  300
DEYVKEFSVE NSSNGRPKRS IEASRETGVV FVDLPRLVQS FMDVNQWKEM FPCLVSKVAT  360
VDVICNGEAP NRNGAVQLMF AELQMLTPLV PTREVYFVRY CKQLSAEQWA IVDVSIDKVE  420
ENIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHTMYRTVV SSGLAFGARH  480
WMATLQLQCE RLVFFMATNV PTKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSYNTW  540
NKVPSKTGED IRVSSRKNLN DPGEPLGVIV CAVSSVWLPV SPNALFDFLR DEAHRNEWDI  600
MSNGGPVQSI ANLAKGQDRG NAVTIQAMKS KENSMWVLQD SCTNAFESMV IFAPVDIAGM  660
QSVITGCDSS NMAILPSGFS ILPDGLESRP LVITSRQEKS NDTEGGSLLT IAFQILTNSS  720
PTAKLTMESV ESVNTLISCT LRNIKTSLQC EDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	KKKKRK
2	93	99	KKKKRKK
3	95	99	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF530913	0.0	AF530913.1 Gossypium hirsutum homeodomain protein GhHOX1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024189.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A061GB60	0.0	A0A061GB60_THECC; HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain isoform 1
STRING	EOY26811	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12370	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028767t1
Entrez Gene	18595949

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]