PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026767t2
Common NameTCM_026767
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 321aa    MW: 36033.3 Da    PI: 4.606
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026767t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-092512842255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Thecc1EG026767t2 251 WPYPTEEEKLQLSEITGLDQKQINNWFINQRKRH 284
                       59*****************************885 PP
2ELK377e-13204225122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ++K +L+rKYsgyL+sL++EF+
  Thecc1EG026767t2 204 DIKGMLMRKYSGYLSSLRKEFL 225
                       58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.7E-2163107IPR005540KNOX1
PfamPF037908.0E-2165106IPR005540KNOX1
SMARTSM012568.2E-27110161IPR005541KNOX2
PfamPF037913.5E-25113160IPR005541KNOX2
PfamPF037891.1E-9204225IPR005539ELK domain
PROSITE profilePS5121310.58204224IPR005539ELK domain
SMARTSM011882.4E-6204225IPR005539ELK domain
PROSITE profilePS5007112.633224287IPR001356Homeobox domain
SuperFamilySSF466892.44E-19226293IPR009057Homeodomain-like
SMARTSM003896.3E-13226291IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-27229289IPR009057Homeodomain-like
CDDcd000865.54E-13236288No hitNo description
PfamPF059204.8E-17244283IPR008422Homeobox KN domain
PROSITE patternPS000270262285IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDMYRLDNP AISRSNDIVR VDNFAAANFS AAVTTDFLSP VDTILQFDHQ AADTDVTGSD  60
MSDLIKTQIA SHPRYPNLVS AYIECQKIGA PPELVSLLEE IGRENHPIRG CSEIGADPEL  120
DEFMESYCEV LHRYKEELSK PFDEATTFLS NIESQLSNLC KGALTKTLDY RSDEAAGTSE  180
EELSGGEVEA SESQESAVAR PSQDIKGMLM RKYSGYLSSL RKEFLKKRKK GKLPKDARMT  240
LLEWWNNHYR WPYPTEEEKL QLSEITGLDQ KQINNWFINQ RKRHWKPSED MKFALFEGVA  300
GNVGGPVYLD AGVGTGSDNI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228LRKEFLKKRK
2225229KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031154.20.0PREDICTED: homeobox protein knotted-1-like 1
RefseqXP_017977728.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-101KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A061F3S10.0A0A061F3S1_THECC; KNOTTED1-like homeobox gene 6 isoform 2
STRINGEOY116550.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.19e-78KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]