PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024554t1
Common NameTCM_024554
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 407aa    MW: 44757.9 Da    PI: 8.1776
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024554t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1764123155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Thecc1EG024554t1  64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 123
                       57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1364123IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1764132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-1565132IPR001471AP2/ERF domain
PROSITE profilePS5103220.12665131IPR001471AP2/ERF domain
SMARTSM003801.9E-2565137IPR001471AP2/ERF domain
PRINTSPR003673.9E-56677IPR001471AP2/ERF domain
PRINTSPR003673.9E-5113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASTSSSDPG MKAEASGGEN SETVIANDQL LLYRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK  120
YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG LSSSRWDSSF  180
GRVSGSEYFN SMQYSDDPAT ESDYIGGFCI ERKIDLTGCI KWWGTNKTCQ AEPGAKSSEE  240
AKHACPEDIG SELKTSEWAV QPTEPYQMPC LGTSLEGTKR KGSSASALSI LSRSADFKSL  300
QERAVKKQEN NADNDENENK NTINKMDHGK AAEKSVNHDT GSDRLGATLG MSAGLSLQKN  360
VFPLTPFLSA PLLTNYNTID SLVDPVLWTS LVPVLPTGPS RNPEGC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028653.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-165AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A061F3U10.0A0A061F3U1_THECC; AP2 domain-containing transcription factor isoform 1
STRINGEOY091550.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-153AP2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]