PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022395t1
Common NameTCM_022395
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 538aa    MW: 61200.5 Da    PI: 6.6937
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022395t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.4e-24167266186
          trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                       +Wt+++v++Li a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ 
  Thecc1EG022395t1 167 KWTDSMVRLLIMAVYYIGDEAGSEGndpagkkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQ 259
                       7**************99888876433677788999999**********************************************559****** PP

          trihelix  80 pyfdqle 86 
                       +++d ++
  Thecc1EG022395t1 260 SLLDTMD 266
                       ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-22165291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MFSISLNLLR SNSLHLSFLS AHIVVFFCYI IENLKERALT AFFSGYRRRR RRSFQVPGDC  60
YNSMVVSSLL GMLGLEMPLH PQQQQQQPQN PQSAQNPHQL HHHPQMVAYS LHETDHSQHQ  120
QSVKQGYPFA SKTKQLSPLS DEDEPGFTPD DGAADAKRKI SPWQRMKWTD SMVRLLIMAV  180
YYIGDEAGSE GNDPAGKKKA GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY  240
KRVNDILGRG TACKVVENQS LLDTMDLSPK MKEEVRKLLN SKHLFFREMC AYHNSCGHGA  300
TAGASGANHS PEVATETSQI QHQQAQQQRC LHSSDTAQIA GNSGGMDPEA LKLTKVGSDE  360
EDDDDDDDSD DDEDEDDEEA MDGHSRGHNG HGQEDDEDND EKSTRKRPRK GALAMSLSPL  420
MQQLSCEAVN VIQDGSKSVW EKHWMKMRLM QLEEQQVSYQ YQAFELEKQR LKWVKFSGKK  480
EREMEKAKLE NERRRLENER MVLLVRQKEL ELVDLQHQHQ PQQHSSSKRG DPSSITG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027577.20.0PREDICTED: transcriptional regulator EFH1 isoform X1
TrEMBLA0A061F0P10.0A0A061F0P1_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRINGEOY080790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-85sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]