PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022077t1

Common Name

TCM_022077

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

AP2

Protein Properties

Length: 494aa MW: 54530.3 Da PI: 7.0493

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022077t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	158	207	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Thecc1EG022077t1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*****************......55**********************997 PP
2	AP2	42	2.3e-13	250	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Thecc1EG022077t1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 300 89******.7**5553..2.26******99********99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.7E-9	158	207	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-16	158	216	IPR016177	DNA-binding domain
CDD	cd00018	9.17E-11	159	217	No hit	No description
SMART	SM00380	2.0E-32	159	221	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-17	159	215	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.794	159	215	IPR001471	AP2/ERF domain
Pfam	PF00847	5.4E-9	250	300	IPR001471	AP2/ERF domain
CDD	cd00018	2.26E-24	250	310	No hit	No description
SuperFamily	SSF54171	1.18E-16	250	309	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-31	251	314	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-15	251	308	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.514	251	308	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-6	252	263	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-6	290	310	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MMLDLNLSVI SGGDDSVEMA GEALPDFSGY NNKQMENSGS FDSSIVNADT TTTTGDDDSS 60 SNAAAADTFA YSFGILKTTE KRENNQRTIP LFPVNVQGGG GKSTGSSQKE WLDLGKSREA 120 SEQHCGAAEQ RIAAQQQQQV QLKQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVNDYE EDVKQMSNFT KEEFVHILRR 240 QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCNG 300 REAVTNFEPS TYEGELISES DNGDRNQGLD LNLGIAPPYT SDPQKENNNS DNFAIQRGWD 360 GLPVETGARI DNSAPATMRV QPSLGQAMAF KHLQNWNGAN PSFFPVYRER AIEKRMEVDY 420 APNWAWQIQG LYGGANPVPL FPTAASSGFS SSTITSPSAA AGQLCIPNTT FLHRHHFPPA 480 ITNPNISHFY CQS*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MMLDLNLSVI SGGDDSVEMA GEALPDFSGY NNKQMENSGS FDSSIVNADT TTTTGDDDSS  60
SNAAAADTFA YSFGILKTTE KRENNQRTIP LFPVNVQGGG GKSTGSSQKE WLDLGKSREA  120
SEQHCGAAEQ RIAAQQQQQV QLKQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVNDYE EDVKQMSNFT KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCNG  300
REAVTNFEPS TYEGELISES DNGDRNQGLD LNLGIAPPYT SDPQKENNNS DNFAIQRGWD  360
GLPVETGARI DNSAPATMRV QPSLGQAMAF KHLQNWNGAN PSFFPVYRER AIEKRMEVDY  420
APNWAWQIQG LYGGANPVPL FPTAASSGFS SSTITSPSAA AGQLCIPNTT FLHRHHFPPA  480
ITNPNISHFY CQS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250\|UniProtKB:P47927, ECO:0000250\|UniProtKB:Q8H443}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027220.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
Swissprot	B8B8J2	1e-111	AP23_ORYSI; APETALA2-like protein 3
TrEMBL	A0A061ETL4	0.0	A0A061ETL4_THECC; AP2.7 isoform 1
STRING	EOY07722	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22061	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-104	related to AP2.7

Link Out ? help Back to Top
Phytozome	Thecc1EG022077t1
Entrez Gene	18597889

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]