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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021688t1 | ||||||||
Common Name | TCM_021688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 27701.1 Da PI: 6.4067 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.6e-32 | 12 | 66 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYR+ Thecc1EG021688t1 12 KERLRWTQELHDRFEDAVNQLGGPDRATPKGILKAMGVDGLTIYHVKSHLQKYRI 66 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.689 | 9 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-30 | 11 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-18 | 11 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-25 | 12 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-10 | 14 | 65 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRRPSRSDGL AKERLRWTQE LHDRFEDAVN QLGGPDRATP KGILKAMGVD GLTIYHVKSH 60 LQKYRILKFV PETNTKCKFE RRDISEILPN FGTTSGAQLN EALQMHKEAE RKQGDHQLEA 120 QRNLKIKIEA QVIFLERLAG QHGNRATPTK ATKPFSPTSL PSLCEESEST AKDGFETDPE 180 ADRNEIESGE RVQAMYAFES WDQYDHQDMV LNREERVSYL ANDISFPWNV PVCSSSPLVP 240 SFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-22 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-22 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-22 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-22 | 12 | 69 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-22 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN127768 | 0.0 | JN127768.1 Theobroma cacao clone TCC_BC011L18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026687.2 | 1e-179 | PREDICTED: myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-42 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A061EY79 | 0.0 | A0A061EY79_THECC; Myb-like HTH transcriptional regulator family protein isoform 1 | ||||
STRING | EOY07189 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16802 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 6e-45 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021688t1 |
Entrez Gene | 18597537 |
Publications ? help Back to Top | |||
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