PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018659t1
Common NameTCM_018659
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 413aa    MW: 45458.5 Da    PI: 4.484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018659t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-194695255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Thecc1EG018659t1 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95
                      789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.86E-3245102No hitNo description
PfamPF008471.0E-134695IPR001471AP2/ERF domain
SMARTSM003808.9E-3646109IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1946103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2746102IPR001471AP2/ERF domain
PROSITE profilePS5103219.55946103IPR001471AP2/ERF domain
PRINTSPR003676.1E-84758IPR001471AP2/ERF domain
PRINTSPR003676.1E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MARKRKAGQV VEEKDVTSEQ TMAWDEMVKE AAAAAALGGP RRARKRFVGV RQRPSGRWVA  60
EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSPSSN STPALSSKIT  120
NLLLQRLKAR KNPSAPLPTS PPINQQPMQQ AEKCRGDTTD FLDSQFPDFL NDFEVCYMSN  180
DNINNTTANA ADYLTTSLES CLTENEDSSR RELDSGCTFS DAAQSSRFDG DGVGEERDED  240
GEEGHDMGAL DFQFVDDIGA PCYYSPFQIA EEIEVPMEPE SFGDEPSMIR AAMKRMTYER  300
KFSASLYAFN GISELLRLKL GSENVMGRAR SEQLTKLQNA CEKNKGEKTV KEDDTEMMGK  360
KQEKSPQTSV ESSGSNMGFS SPSSVEMGAS SAGNDGESLW SSLDLPPICF VN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032619.20.0PREDICTED: ethylene-responsive transcription factor ERF119
TrEMBLA0A061EEW90.0A0A061EEW9_THECC; WIN1-like protein, putative
STRINGEOY035450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1827989
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]