PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016719t1
Common NameTCM_016719
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family BES1
Protein Properties Length: 672aa    MW: 75583.8 Da    PI: 5.9493
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016719t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822166.12.1e-51592011134
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92 
                       +g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr   +p+ +++++ g++  +s+es
  Thecc1EG016719t1  59 TGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLRHSPPpQHHQHLGAFPVRSVES 151
                       5899******************************************************************55555559*************** PP

            DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134
                       +++ sslks+++++ ++ + ++ + ++++sp+slds+ +a+         
  Thecc1EG016719t1 152 PISaSSLKSCSVKATLDCQPPVVRIDESLSPASLDSVVIAERdtrsekyP 201
                       ***9***********************************98865544333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.6E-5160212IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.32E-155230666IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.5E-168233664IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.6E-80255628IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56270284IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56291309IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56313334IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56406428IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56479498IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56513529IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56530541IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56548571IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.2E-56586608IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MQNPQSSTNA NQDPTIEPQP QPQPRRPRGF AATAAAAAAS VSPTGTPSGT AAASTGSSTG  60
KGKREREKEK ERTKLRERHR RAITSRMLAG LRQYGNFPLP ARADMNDVLA ALAREAGWTV  120
EPDGTTYRLR HSPPPQHHQH LGAFPVRSVE SPISASSLKS CSVKATLDCQ PPVVRIDESL  180
SPASLDSVVI AERDTRSEKY PSTSPINSVE CLEADQLIQD VHSGEHENDF TGTQYVPVFI  240
KLSTGVINNF CQLADPEGVR QVLSHMKSLN VDGVVVDCWW GIVEGWNPQK YVWSGYRELF  300
NVIQEFKMKI QVVMAFHEYG RTDTAELLIS LPQWILEIGK ENQDIFFTDR EGRRTTECLS  360
WGIDKERVLN GRTGIEVYFD FMRNFRTEFD DLFAEGLFSA VEIGLGPSGE LRYPSFSERM  420
GWRYPGIGEF QCYDKYLQQN LRKAAKLRGH SFWARGPDNA GQYNSRPHET GFFCERGDYD  480
SYYGRFFLHW YAQSLTDHAD NVLSLASLAF EETKIIVKVP AIYWWYKTSS HAAEVTAGYY  540
NPTNQDGYSP VFEVLKKHSV TIKFVCSGLQ VCSYESDEAF ADPEGLSWQV LNSAWDRGLT  600
VAGENTLSCF DREGCLRIIE TAKPRNDPDH RHFSFFVYQQ PSPLVEGVIC FLDLDYFIKC  660
MHGDITGDLV P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12123462510401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040897.20.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A061G7K50.0A0A061G7K5_THECC; Beta-amylase
STRINGEOY253980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]