PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016150t1
Common NameTCM_016150
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 300aa    MW: 33689.9 Da    PI: 6.7069
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016150t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-082482812154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  Thecc1EG016150t1 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281
                       469*****************************87 PP
2ELK25.53.1e-09202223122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  Thecc1EG016150t1 202 ELKIELKQGFKSRIEDVREEIL 223
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.1E-193377IPR005540KNOX1
PfamPF037904.3E-173576IPR005540KNOX1
SMARTSM012563.0E-2491146IPR005541KNOX2
PfamPF037911.6E-1794145IPR005541KNOX2
PROSITE profilePS512139.132202222IPR005539ELK domain
PROSITE profilePS5007111.677222285IPR001356Homeobox domain
SuperFamilySSF466894.02E-16224289IPR009057Homeodomain-like
SMARTSM003891.4E-10224289IPR001356Homeobox domain
CDDcd000863.81E-11225286No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25229287IPR009057Homeodomain-like
PfamPF059201.0E-17242281IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQEPGLGMMS SGGSGAIGGL SSGEVSVSGD QNRQLRAEIA THPLYEQLLA AHVSCLRVAT  60
PIDQLPLIDA QLAQSHNLLR SYASQHHQHG HSLSPHERQE LDNFLAQYLI VLCTFKEQLQ  120
QHVRVHAVEA VMACREIENN LQALTGVSLG EGTGATMSDD EDELQMDFSL DQSGADGHDL  180
MGFGPLLPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK  240
NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12225281864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278298RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2002500.0KC200250.1 Gossypium hirsutum KNOX protein (KNL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040089.20.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-173KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A061G4010.0A0A061G401_THECC; KNOTTED-like homeobox of 7
STRINGEOY245900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-170KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]