PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015579t1
Common NameTCM_015579
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 342aa    MW: 36385.2 Da    PI: 6.3038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015579t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-192373256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  Thecc1EG015579t1 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 73
                      689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-132372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-292380IPR001471AP2/ERF domain
CDDcd000186.47E-212380No hitNo description
PROSITE profilePS5103220.6792380IPR001471AP2/ERF domain
SMARTSM003803.7E-362386IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-202481IPR016177DNA-binding domain
PRINTSPR003675.9E-82435IPR001471AP2/ERF domain
PRINTSPR003675.9E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGAPSSSNGV RGRKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEEAA  60
RAYDDAARAL RGANARTNFE LPQSASSTCG NRVSLDNMQP FSFEEVCGTG SDADGFLGAL  120
KAKLLDGKGL RVLSPASCAG LQPSVASSSP HNNSNVSRKS GATTVAPQGI GNMNPVQGPV  180
NPGFSKPDLV VNQDHEHDDQ AAAGHIGVQW HQPGQSQTAS IASMMWSNEP SYEAAWGTQM  240
NQVPPNGLFN ITTCTTATST WPLSGTTEST MDLSYSDQCT IEMQMNMNGK ANMVSMPISQ  300
IDGTTEGVWP SEQQFVHSDN NGWSGANGSW DPYIYVSSVL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1521791271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972748.10.0PREDICTED: uncharacterized protein LOC18605918
TrEMBLA0A061G1T00.0A0A061G1T0_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY237950.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]