PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015044t1
Common NameTCM_015044
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25138.7 Da    PI: 9.4753
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015044t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.2e-30958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl e+ 
  Thecc1EG015044t1  9 ERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVALIIFSSRGKLSEFG 58
                      69**********************************************95 PP
2K-box87.62.4e-29821701199
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++++l+qe+ kLk+++e+Lqr+qRhl Ge+Le+Ls+keL ++e+qL+++l++ R+kK +llle +eel+kke el++enk+L+++le
  Thecc1EG015044t1  82 MDETQTLYQEVLKLKAKYESLQRSQRHLFGEELEPLSIKELYKIEKQLDRALTQARQKKVQLLLERMEELRKKEVELEDENKRLQSQLE 170
                       45689********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.399161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-32290IPR002100Transcription factor, MADS-box
CDDcd002653.63E-38270No hitNo description
PRINTSPR004043.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2483169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.00485175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGMLK KAYELSVLCD AEVALIIFSS RGKLSEFGSS  60
TSVSQTLEKY WQHRYTSNVH LMDETQTLYQ EVLKLKAKYE SLQRSQRHLF GEELEPLSIK  120
ELYKIEKQLD RALTQARQKK VQLLLERMEE LRKKEVELED ENKRLQSQLE LEQSFPAAQG  180
LGDPNIEAGY HQFIPQERVS EARVDRGANK PTAGWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20173172MEF2C
5f28_B5e-20173172MEF2C
5f28_C5e-20173172MEF2C
5f28_D5e-20173172MEF2C
6byy_A5e-20173172MEF2 CHIMERA
6byy_B5e-20173172MEF2 CHIMERA
6byy_C5e-20173172MEF2 CHIMERA
6byy_D5e-20173172MEF2 CHIMERA
6bz1_A5e-20173172MEF2 CHIMERA
6bz1_B5e-20173172MEF2 CHIMERA
6bz1_C5e-20173172MEF2 CHIMERA
6bz1_D5e-20173172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973049.11e-151PREDICTED: MADS-box transcription factor 6 isoform X1
SwissprotQ8LLR12e-78MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A061G1E01e-156A0A061G1E0_THECC; AGAMOUS-like 6, putative isoform 1
STRINGEOY230331e-149(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-55AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]