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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014661t2 | ||||||||
Common Name | TCM_014661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24429.1 Da PI: 10.5336 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifsstgk y ++s Thecc1EG014661t2 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSTGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 70 | 7.5e-24 | 84 | 172 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e ++ e++ Lk+ i++L+ ++hl GedL sL +++L+qLe+qL+ +++++Rs+K +++ ++ l+++ kel+e+n++L+k+l+e Thecc1EG014661t2 84 RTMEFWRSEIEELKRSINTLEARLKHLSGEDLLSLGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKELHEDNTRLQKRLKE 172 56899********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.11E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.45E-38 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 2.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-21 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.051 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGKVEMKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSS TGKAYQFASH 60 DMDRSIGKYR SEVGLPDSSN PQFRTMEFWR SEIEELKRSI NTLEARLKHL SGEDLLSLGM 120 RDLKQLERQL KIGVERVRSR KRRIVSDHAT LLKRRHKELH EDNTRLQKRL KELHDGNLSS 180 TIVGENVCSM FQQRILQDEN LLKEAEKVSH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-24 | 1 | 79 | 1 | 78 | MEF2C |
5f28_B | 7e-24 | 1 | 79 | 1 | 78 | MEF2C |
5f28_C | 7e-24 | 1 | 79 | 1 | 78 | MEF2C |
5f28_D | 7e-24 | 1 | 79 | 1 | 78 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038007.1 | 1e-152 | PREDICTED: MADS-box transcription factor 23 isoform X2 | ||||
TrEMBL | A0A061FZK9 | 1e-151 | A0A061FZK9_THECC; K-box region and MADS-box transcription factor family protein isoform 2 | ||||
STRING | EOY22507 | 1e-131 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 9e-47 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014661t2 |
Entrez Gene | 18605122 |
Publications ? help Back to Top | |||
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