PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014471t1
Common NameTCM_014471
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 269aa    MW: 29793.4 Da    PI: 8.285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014471t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-1689138255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Thecc1EG014471t1  89 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 138
                       689******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-3389152IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1989147IPR016177DNA-binding domain
PROSITE profilePS5103219.98189146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2789146IPR001471AP2/ERF domain
CDDcd000181.70E-3089148No hitNo description
PfamPF008472.4E-1089138IPR001471AP2/ERF domain
PRINTSPR003672.6E-790101IPR001471AP2/ERF domain
PRINTSPR003672.6E-7112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTVSQNHSIK SPLFHNIIAV PPQFCSTLTL SPPIMDSMDS SRTIPSHQSQ SPCKNHISIP  60
LETENFHEDS EKRGKKLTKR GNNDNTGRRY LGVRQRPSGR WVAEIKDSSQ KLRLWLGTFD  120
RAEEAALAYD SAARLLRGRN AKTNFQYHGV MNTYEENCNL LGKNPRLYQL LQLTITKNHA  180
RSTFLKSIGT VPWQNQNIGN KVDPVDFDTL VEETIFCSPT SDQDEGCNNN LSQLSLGSSK  240
VYSSVVVAPS FCASLDQGGG EGKSCQDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1587145362ATERF1
3gcc_A2e-1587145362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972753.11e-174PREDICTED: ethylene-responsive transcription factor ERF095
TrEMBLA0A061FZF10.0A0A061FZF1_THECC; AP2 11, putative
STRINGEOY222470.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]