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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG014345t3 | ||||||||
Common Name | TCM_014345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25900.8 Da PI: 10.1307 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.6e-31 | 59 | 109 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Thecc1EG014345t3 59 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 109 79***********************************************96 PP | |||||||
2 | K-box | 95.6 | 7.6e-32 | 126 | 208 | 2 | 84 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++++ +e ++ s++ e+akLk+++e Lqr+qRh++GedL++Lsl+eLq+LeqqL+++lk++Rs+Kn+l++e+i+elqkk Thecc1EG014345t3 126 AERQLAGNEVDQNGSWTLEHAKLKARMEVLQRNQRHFMGEDLDNLSLRELQNLEQQLDSALKHVRSRKNQLMFESISELQKKH 208 55666777788899*******************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.52 | 51 | 111 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.9E-40 | 51 | 110 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-40 | 52 | 129 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-34 | 52 | 137 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 53 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 53 | 107 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 60 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 73 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 88 | 109 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-25 | 134 | 208 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.742 | 138 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
LKIPRESEQE REQTLSPLSL PELTVSFLFL GCCQWSWWRP FARQKGKDII MGRGRVQLKR 60 IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD SCMERILERY 120 ERYSYAERQL AGNEVDQNGS WTLEHAKLKA RMEVLQRNQR HFMGEDLDNL SLRELQNLEQ 180 QLDSALKHVR SRKNQLMFES ISELQKKHCK SRITCLQRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 8e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 8e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 8e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 8e-22 | 51 | 124 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM236437 | 1e-178 | HM236437.1 UNVERIFIED: Gossypium hirsutum MADS21-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973951.1 | 1e-109 | PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X3 | ||||
Swissprot | Q6E6S7 | 1e-93 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A061FZ33 | 1e-159 | A0A061FZ33_THECC; K-box region and MADS-box transcription factor family protein isoform 2 (Fragment) | ||||
STRING | EOY22135 | 1e-108 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 9e-92 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG014345t3 |
Entrez Gene | 18604882 |
Publications ? help Back to Top | |||
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