PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011874t1
Common NameTCM_011874
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 487aa    MW: 53896.7 Da    PI: 8.4371
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011874t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP157.29.4e-491162702134
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesss 79 
                       +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+aikelt++               ss      ++es++
  Thecc1EG011874t1 116 TGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKAAIKELTDNfpgvkhscsgggksvSS------TSESEV 202
                       79**************************************************************88766666554432211......222222 PP

               TCP  80 ssasnsssg................kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                       +sa+    +                ++++s+a  +k++++++as++ +a+esr karararertrekm+++ 
  Thecc1EG011874t1 203 VSAA----KeyednmgdlqgviargESMRSTArATKERKSRKASFNPVARESRDKARARARERTREKMKMRG 270
                       2222....023335667888999997777777566777777777788888*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-47116268IPR005333Transcription factor, TCP
PROSITE profilePS5136937.144118176IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.753248265IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MFPSNNNYNP FPLTTHTMPG SSFTGDRNSA GSSQEDPNPP FWHLPAPFID DDDDGLLMSH  60
LLSQAQQQIV GSSSNVAPPD SEINAASPMK ETKKVTTKRK RSAGNGAKQG IPRKRTGKKD  120
RHSKIYTAHG PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFSKSK AAIKELTDNF  180
PGVKHSCSGG GKSVSSTSES EVVSAAKEYE DNMGDLQGVI ARGESMRSTA RATKERKSRK  240
ASFNPVARES RDKARARARE RTREKMKMRG LEKSQKCSDE SNPNELERLQ SSSPLEAGEN  300
LGPSTQTNST LKVVAEEVEQ RHQSTVHLLE HEIDSVSVIE KFLGLTRAPR SSSMFNYSHN  360
FADSSEENSE ENCPIFSGNW GMNSDRIRYG YYALTNIKDS TGNAQEQNPS IIFMTDPNAN  420
TQEENPSSNL VVNSYAKTVS HNPDLMTPSN AHEGSPTSIL VPSSDIGLHS HYQENPIVAS  480
KYHNFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046319.20.0PREDICTED: transcription factor TCP12
TrEMBLA0A061EB690.0A0A061EB69_THECC; TCP domain protein 12, putative
STRINGEOY021510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-31TCP domain protein 12
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]