PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011811t2
Common NameTCM_011811
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 334aa    MW: 36525.6 Da    PI: 4.5582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011811t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18123170253
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       +  GVr++k +g+W+AeIr+p +   ++r++lg+++t eeAaka++a ++++
  Thecc1EG011811t2 123 KPVGVRQRK-WGKWAAEIRHPLK---KTRIWLGTYDTLEEAAKAYDAKKLEF 170
                       789*****9.**********743...5********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.89E-23122170No hitNo description
PROSITE profilePS5103219.335123189IPR001471AP2/ERF domain
PfamPF008477.8E-13123171IPR001471AP2/ERF domain
SMARTSM003809.8E-17123177IPR001471AP2/ERF domain
PRINTSPR003671.1E-7124135IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-16125170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-22126171IPR001471AP2/ERF domain
PRINTSPR003671.1E-7146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPEPRKQSMD LSKSSKKTKK IQPILTEEET QMTRKVRVIF HDPYATDSSS SEDESEGSVA  60
RKAQKGKRVV REIKVPAFGL VPRLKPLDSE TSSQDSNTKT PARKKRAWSK TLEGKAPLSK  120
PKKPVGVRQR KWGKWAAEIR HPLKKTRIWL GTYDTLEEAA KAYDAKKLEF DALAAAAAAS  180
ASSDKTNEAA CSAVASHNGN SVPSTSEESE SLLSHTSPSS VLELDTSASV SVSNNNGDFE  240
DENNEGLDVN FANLPIPDFC FIDDPLLSGS VGQELNLDAE PADYLLVNDF GMMLEEYCSI  300
EDLSICGIEG DEPSELPDCD FSTDDFLFGE EVAP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046241.20.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_007046242.20.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_017971858.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A061EIE20.0A0A061EIE2_THECC; Integrase-type DNA-binding superfamily protein, putative isoform 2 (Fragment)
STRINGEOY020730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-39ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]