PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG009901t1
Common NameTCM_009901
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 441aa    MW: 48801.7 Da    PI: 6.5835
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG009901t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.11e-091659340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Thecc1EG009901t1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                      578*****************************667888888876 PP
2CCT682.6e-23384427144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Thecc1EG009901t1 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 427
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9781461IPR000315B-box-type zinc finger
SMARTSM003366.7E-111461IPR000315B-box-type zinc finger
PfamPF006439.4E-81659IPR000315B-box-type zinc finger
CDDcd000216.39E-101761No hitNo description
PROSITE profilePS5101716.083384426IPR010402CCT domain
PfamPF062037.4E-18384426IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MISTKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASLQSSG HEAPLESFAP SWHKGFTRKA RTRRPTKASI HQKLKAEHTK RNSNPFPLVP  120
EIGADEISYE ENEEEQLLYR VPIFDPLVAK LCTSTTSNEA AVSAVGNDVE TADAAVSESK  180
AFLACNGQDA DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFGMEDLGL KDSKEKYFRD  240
CSLGNGKVKI EDEESFEAVG ACHVDSEIDM AREPFKLNFS CDSPGNCGEE DELVKEEVTV  300
KSYEEYEEDT AKKKKRKILL SLNYESVITA WASQGSPWTS GGRPDFDPDE CWPDCMGTGG  360
TEVHHTYSDL IGMGAHQALG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK  420
GRFVKRASFL AGPAFPFVNK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316KKKKRK
2394410RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044348.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A061E5B80.0A0A061E5B8_THECC; B-box type zinc finger protein with CCT domain, putative
STRINGEOY001800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-103B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]