PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008446t1
Common NameTCM_008446
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 460aa    MW: 51133.8 Da    PI: 7.0882
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008446t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.5e-071043235
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                      e+  C+ ++e+ + l+C+ ++  lC  C ++ H+
  Thecc1EG008446t1 10 EMVPCDFCNEQIAVLYCRADSAKLCLFCDQHVHS 43
                      6789**************************9995 PP
2zf-B_box21.64.6e-075498341
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       ++C++++ ++++  C +++  lC++C    H +      H++ p
  Thecc1EG008446t1 54 SQICDNCSTEPVSVRCATDNLVLCQECDWDAHGScsvssaHDRNP 98
                      579*************************99994477888887766 PP
3CCT64.23.9e-22411454144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Thecc1EG008446t1 411 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 454
                       7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011956IPR000315B-box-type zinc finger
SMARTSM003362.2E-12956IPR000315B-box-type zinc finger
CDDcd000213.12E-71244No hitNo description
PROSITE profilePS501199.6275299IPR000315B-box-type zinc finger
CDDcd000211.41E-55699No hitNo description
SMARTSM003363.85799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912411453IPR010402CCT domain
PfamPF062031.8E-16411453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVSPKPESKE MVPCDFCNEQ IAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC  60
STEPVSVRCA TDNLVLCQEC DWDAHGSCSV SSAHDRNPVE GFSGCPSALE LASAWGFDLE  120
EKKPLAKSWN GCHQDLMMPA MESWLYKSSL QEMMVPYECF TCEETVKKQS HGSGKCKQII  180
FKQLVELMKR DFMAGDVADG GRGAGENLVP YVEAKGSGLA RQEFIQPQPQ PQTQTPFTSL  240
LMMQTRESER TVDGGDVLWN GNPNNQTPQI WDFNLGRLRG HEECSQLEDV GYGGSDAGFM  300
IKNFGELMKE TSLSNAKMLG DMCHINYTPP QDDMASINNS SNLAASQGPA TSESNNLPIA  360
RPSSVSAFGK PKGSSSSKDV HFIEHPILMR GDQVRQSAPS KADLELLTQN RGNAMQRYKE  420
KKKTRRYDKH IRYESRKARA DTRKRVKGRF VKATEAPDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971792.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A061E4330.0A0A061E433_THECC; B-box type zinc finger protein with CCT domain, putative isoform 1
STRINGEOX996840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-118B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]