PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005203t1
Common NameTCM_005203
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 313aa    MW: 35669.4 Da    PI: 4.825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005203t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20118167255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Thecc1EG005203t1 118 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 167
                       8********.**********965...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.95E-33118174No hitNo description
Gene3DG3DSA:3.30.730.103.0E-30118175IPR001471AP2/ERF domain
PROSITE profilePS5103223.565118175IPR001471AP2/ERF domain
PfamPF008473.8E-14118167IPR001471AP2/ERF domain
SMARTSM003806.2E-37118183IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21118174IPR016177DNA-binding domain
PRINTSPR003676.5E-11119130IPR001471AP2/ERF domain
PRINTSPR003676.5E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNPASSFRVK YAERRRVTNK LVKPSSKWFS MESSAKAPRI VRISVTDGDA TDSSSDESEH  60
ERNHRVKRYV NEIRIEDCST FNFSKSANKQ NKQTNSKCNP VNIRSKKQQQ QCLSTGVKYR  120
GVRQRPWGRW AAEIRDPTSR TRVWLGTYDT AEEAALVYDR AAIRIKGPDA LTNFVKPPVR  180
PSSPEIELET ISGYDSGQES QSLCSPTSVL RFQSNEEAEL QTESKDDSCE LTESEWRPVQ  240
ERPEEPTNLS DGYLLTDPGA LCDYFDCDNL APIFLDEMRL PEERNLEQDY GDISVKLDVD  300
FGSCTWDVDN YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22114185170ATERF1
3gcc_A7e-22114185170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970714.10.0PREDICTED: ethylene-responsive transcription factor CRF6
TrEMBLA0A061DSM40.0A0A061DSM4_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX957890.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-58cytokinin response factor 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]