PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002835t1
Common NameTCM_002835
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 233aa    MW: 26117.5 Da    PI: 10.6859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002835t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.3e-12109150351
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Thecc1EG002835t1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                       79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-6108151IPR001471AP2/ERF domain
SMARTSM003801.3E-4108165IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-8109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-6111155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFL TPLPRFFDNG HAPENSSQNA KSISVHPMPS DFTGHIHGKS  60
IAKVGSGSPN VSGSGSSKEH HNQPFPGQPI KRRKRHRRKH VQNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKQELRK FKWDEFLAYT  180
RRSITNKKYK RRLGAGPQKR SEPAIENSDW DSKQGVNSLS ASEEAGPDSS AS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017985312.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_017985316.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_017985322.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_017985325.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-46ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A061DN511e-172A0A061DN51_THECC; Integrase-type DNA-binding superfamily protein isoform 1
STRINGEOX938571e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-50ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]