PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001841t1
Common NameTCM_001841
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31109.2 Da    PI: 10.4091
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001841t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-3157106150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Thecc1EG001841t1  57 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 106
                       79***********************************************8 PP
2K-box1034e-3412921415100
             K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + +qqe++kL+++i+  q+ +Rh+lGe L++L++keL++Le +Lek++++iRskKnell+++ie +qk+e elq++n++Lr+k++e
  Thecc1EG001841t1 129 SFYQQEASKLRRQIRDVQNMNRHILGEALSTLTFKELKNLEGRLEKGISRIRSKKNELLFAEIEFMQKREVELQNDNMYLRAKIAE 214
                       679********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4249108IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.13249109IPR002100Transcription factor, MADS-box
CDDcd002655.53E-4450123No hitNo description
SuperFamilySSF554558.24E-3350121IPR002100Transcription factor, MADS-box
PROSITE patternPS00350051105IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-335171IPR002100Transcription factor, MADS-box
PfamPF003191.1E-2658105IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-337186IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-3386107IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.588128218IPR002487Transcription factor, K-box
PfamPF014862.2E-26130212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSRTSHGSHP HLRHKLWLTA LSRRNKNSNN LSTTEFPNQE PESSSQKKMG RGKIEIKRIE  60
NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG RLYEYANNSV RTTIDRYKKA  120
CADASNPGSF YQQEASKLRR QIRDVQNMNR HILGEALSTL TFKELKNLEG RLEKGISRIR  180
SKKNELLFAE IEFMQKREVE LQNDNMYLRA KIAENERAQQ QQQQQANLIQ GSVFQAVTSQ  240
PYNRNFLPVN LLEPSNDYSS QDQTALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2049117169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2049117169Myocyte-specific enhancer factor 2B
1tqe_R1e-2049117169Myocyte-specific enhancer factor 2B
1tqe_S1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_A1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_B1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_C1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_D1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_E1e-2049117169Myocyte-specific enhancer factor 2B
6c9l_F1e-2049117169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2020911e-108EF202091.1 Gossypium hirsutum MADS-box protein MADS7 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048826.11e-153PREDICTED: agamous-like MADS-box protein AGL1
RefseqXP_017969510.11e-153PREDICTED: agamous-like MADS-box protein AGL1
SwissprotQ93XH41e-128MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A061DKL20.0A0A061DKL2_THECC; K-box region and MADS-box transcription factor family protein isoform 1
STRINGEOX929820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]