PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000974t1
Common NameTCM_000974
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 521aa    MW: 57519.4 Da    PI: 6.2384
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000974t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15237296155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Thecc1EG000974t1 237 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 296
                       57*******************666664478446*************************98 PP
2AP249.88.8e-16339390155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Thecc1EG000974t1 339 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 390
                       57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-12237296IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18237306IPR016177DNA-binding domain
CDDcd000184.16E-23237306No hitNo description
Gene3DG3DSA:3.30.730.101.9E-16238305IPR001471AP2/ERF domain
SMARTSM003803.4E-29238310IPR001471AP2/ERF domain
PROSITE profilePS5103219.44238304IPR001471AP2/ERF domain
PRINTSPR003673.5E-6239250IPR001471AP2/ERF domain
PfamPF008474.6E-10339390IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18339399IPR016177DNA-binding domain
CDDcd000181.00E-11339398No hitNo description
Gene3DG3DSA:3.30.730.103.8E-18340398IPR001471AP2/ERF domain
SMARTSM003801.6E-31340404IPR001471AP2/ERF domain
PROSITE profilePS5103219.151340398IPR001471AP2/ERF domain
PRINTSPR003673.5E-6380400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAPASNWLSF SLSPMEMLRS SSEPQFVSYE GSSAAAVSSP HYLIDNFYAN GWTNPKHQVF  60
FTEGEENQCK EAHPPAMTDE SPILTSFHQQ APKLEDFLGD SSSIVRYSDS QTETQDSSLT  120
QIYDHSGSAY FNEHQDLKAI TGFQAFSTNS GSEVDDSASM GRTQLTAVEF PGHSIESTGT  180
ELGFTNRPTA GALSLGVNQS CENNNNNNTN DNNNKAIVSV DSDCSKKIAD TFGQRTSIYR  240
GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTAT  300
TNFPISNYTK ELEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV  360
AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN RYDVEAIAKS SLPIGGAAKR  420
LKLSLESEQK PIVNHEQQPQ CSSNSNNISF APMQPISAIP CGIPFDTAAA AAFYQQNLYH  480
QLQAANIGIS DPPGSSSAMA TQLNVMQQPA EFFLWPHQTY *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969779.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A061DHK60.0A0A061DHK6_THECC; AP2-like ethylene-responsive transcription factor AIL6
STRINGEOX919250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]