PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000479t2
Common NameTCM_000479
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 826aa    MW: 89393.1 Da    PI: 7.2999
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000479t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.7e-075726101954
                       HHH..SSS--HHHHHHHHHHCTS-HHH.HHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterq.VkvWFqNrRak 54 
                       Fe   ++yps +++  LA+++gL+ +q V++WF N R +
  Thecc1EG000479t2 572 FEHflHPYPSDADKHLLARQTGLSRNQvVSNWFINARVR 610
                       664459******************988369*******88 PP
2BELL121.82.8e-39432503172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkda++ q+
  Thecc1EG000479t2 432 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAVSAQL 503
                       589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-83362501IPR006563POX domain
PfamPF075267.8E-52367500IPR006563POX domain
PROSITE profilePS500719.361550614IPR001356Homeobox domain
CDDcd000863.16E-11553615No hitNo description
SMARTSM003893.6E-6553618IPR001356Homeobox domain
SuperFamilySSF466891.58E-14555621IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-27556620IPR009057Homeodomain-like
PfamPF059202.1E-16570610IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MGIATPPLVP SILSHHSKTL HQIPIQDKSN NSTNSMSQDY HQAAAGIFSF SNGFERPAVS  60
HQEHQQQQQQ HHFAQQIRRD KLRVQGFEPP PPPLIGIDEE ESNALPVYET AGMLSEMFNF  120
PSGVAAAATA STELLDQPIQ PNYRAHRPPG NTNDWYNNRQ GVVGGLGQLG ESKSHNNRDS  180
LAQQHHQQLP SINADSAAAM HLFLMNPQPR SPSPPPATTS NTLHMLLPNP SSSLQGFNVS  240
GPGGAFGTSA VLSPPQFTWV PDSAHEGGNT GSQLNNPSEI GGVVEGQGLS LSLSSSLQHL  300
EAAKAEELRM GDGGLLYYNQ GGGSSSAAQF QYKGLGNHHQ PLHLQGGVGQ NHQVHVGFGS  360
SLGMVNVLRN SKYVKAAQEL LEEFCSVGRG QFKKNKFGRN NTNPSSNPGS SGGGGGGSSS  420
STKDLPPLSA ADRIEHQRRK VKLLSMLDEV DRRYNHYCEQ MQMVVNSFDL VMGFGSAVPY  480
TALAQKAMSR HFRCLKDAVS AQLKHSCEVL GEKDGAGTSG ITKGETPRLK MLEQSLRQQR  540
AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVV  600
SNWFINARVR LWKPMVEEMY QQETKEGETD KERERNPNNS NNNSNNAQTS TPSTTAEAAA  660
ATAASTPTTT TTATTTTTPA GKRSEINAME NDPSLIAINR QCFSENQAKQ CTPNTTTTTI  720
ISSPSTTTSP TNNNATEVTP PISQPFTTNH DPDMHHRIAG VEDTCRRGSI VTADYGTTTG  780
NTDIGSTLIR FGTTAGDVSL TLGLRHAGNM PEKSSSFSVR DFGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-15559618563Homeobox protein Meis2
3k2a_B9e-15559618563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047070.20.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_017984454.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A061DMP70.0A0A061DMP7_THECC; BEL1-like homeodomain protein 2 isoform 2
STRINGEOX912280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-158BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]