PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000479t1
Common NameTCM_000479
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 825aa    MW: 89294 Da    PI: 7.2999
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000479t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095726091954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Thecc1EG000479t1 572 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 609
                       664459******************************88 PP
2BELL121.82.8e-39432503172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkda++ q+
  Thecc1EG000479t1 432 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAVSAQL 503
                       589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-83362501IPR006563POX domain
PfamPF075267.8E-52367500IPR006563POX domain
PROSITE profilePS5007112.568550613IPR001356Homeobox domain
SMARTSM003891.2E-9553617IPR001356Homeobox domain
CDDcd000868.36E-13553614No hitNo description
SuperFamilySSF466894.28E-17555620IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28556619IPR009057Homeodomain-like
PfamPF059204.2E-18570609IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MGIATPPLVP SILSHHSKTL HQIPIQDKSN NSTNSMSQDY HQAAAGIFSF SNGFERPAVS  60
HQEHQQQQQQ HHFAQQIRRD KLRVQGFEPP PPPLIGIDEE ESNALPVYET AGMLSEMFNF  120
PSGVAAAATA STELLDQPIQ PNYRAHRPPG NTNDWYNNRQ GVVGGLGQLG ESKSHNNRDS  180
LAQQHHQQLP SINADSAAAM HLFLMNPQPR SPSPPPATTS NTLHMLLPNP SSSLQGFNVS  240
GPGGAFGTSA VLSPPQFTWV PDSAHEGGNT GSQLNNPSEI GGVVEGQGLS LSLSSSLQHL  300
EAAKAEELRM GDGGLLYYNQ GGGSSSAAQF QYKGLGNHHQ PLHLQGGVGQ NHQVHVGFGS  360
SLGMVNVLRN SKYVKAAQEL LEEFCSVGRG QFKKNKFGRN NTNPSSNPGS SGGGGGGSSS  420
STKDLPPLSA ADRIEHQRRK VKLLSMLDEV DRRYNHYCEQ MQMVVNSFDL VMGFGSAVPY  480
TALAQKAMSR HFRCLKDAVS AQLKHSCEVL GEKDGAGTSG ITKGETPRLK MLEQSLRQQR  540
AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS  600
NWFINARVRL WKPMVEEMYQ QETKEGETDK ERERNPNNSN NNSNNAQTST PSTTAEAAAA  660
TAASTPTTTT TATTTTTPAG KRSEINAMEN DPSLIAINRQ CFSENQAKQC TPNTTTTTII  720
SSPSTTTSPT NNNATEVTPP ISQPFTTNHD PDMHHRIAGV EDTCRRGSIV TADYGTTTGN  780
TDIGSTLIRF GTTAGDVSLT LGLRHAGNMP EKSSSFSVRD FGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16559617563Homeobox protein Meis2
3k2a_B2e-16559617563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047070.20.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_017984454.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A061DGL10.0A0A061DGL1_THECC; BEL1-like homeodomain protein 2 isoform 1
STRINGEOX912280.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-159BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]