PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000451t2

Common Name

TCM_000451

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BES1

Protein Properties

Length: 303aa MW: 32326.2 Da PI: 8.5768

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000451t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	187.8	4.4e-58	1	129	17	149
DUF822 17 rRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssalaspves 109 rRERrRRaiaakiy+GLRaqGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ +e ag+s+++s +ss+q s++ss+++spv+s Thecc1EG000451t2 1 RRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-LSELAGASTNISACSSIQPSPQSSSFPSPVPS 92 8*********************************************************.9*************************** PP DUF822 110 ysaspksssfpspssldsislasaasllpvlsvlslvsss 149 y+asp+ss psp+++d +++ + llp+l++ ++++++ Thecc1EG000451t2 93 YHASPSSSLCPSPTRFDANPS---TYLLPFLRNIAAIPNN 129 *****************88...5999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.6E-55	1	110	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
RRERRRRAIA AKIYTGLRAQ GNYKLPKHCD NNEVLKALCA EAGWIVEEDG TTYRKGCKPP 60 LSELAGASTN ISACSSIQPS PQSSSFPSPV PSYHASPSSS LCPSPTRFDA NPSTYLLPFL 120 RNIAAIPNNL PPLRISNSAP VTPPLSSPTS RGSKPKADWE SLSNGSLNSC RHPLFATSAP 180 SSPTRRHHKT PATIPECDES DASTVDSGRW VSFQTVASTA AAAVAAPPSP TFNLVKRVVQ 240 QNPLQDGVTG HGGVTWGTVT EIGRGSEFEF ENGRVKPWEG ERIHEIGVDD LELTLGTSKT 300 CA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-28	8	69	391	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-28	8	69	391	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-28	8	69	391	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-28	8	69	391	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313471	0.0	KF313471.1 Firmiana danxiaensis microsatellite a4587_SSR8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047018.2	0.0	PREDICTED: BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-116	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A0A061DFW6	0.0	A0A061DFW6_THECC; Brassinosteroid signaling positive regulator family protein isoform 1
TrEMBL	A0A061DFZ3	0.0	A0A061DFZ3_THECC; Brassinosteroid signaling positive regulator family protein isoform 2 (Fragment)
STRING	EOX91174	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	4e-95	BES1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000451t2
Entrez Gene	18610987

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]