PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_52AE4A6E2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 199aa    MW: 21369.1 Da    PI: 6.2372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_52AE4A6E2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.61.3e-31691186
               trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                           rW+k+ev aLi++r+ +++r+++  lk+plWeevs++m++ g+  rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Traes_6AS_52AE4A6E2.1  6 RWPKHEVEALIRVRSGLDNRFQEPGLKGPLWEEVSARMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 91
                           8******************************************99*************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.515164IPR017877Myb-like domain
SMARTSM007172.8E-4366IPR001005SANT/Myb domain
PfamPF138372.9E-23593No hitNo description
Gene3DG3DSA:1.10.10.601.2E-4563IPR009057Homeodomain-like
CDDcd122031.36E-28571No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSSSSRWPKH EVEALIRVRS GLDNRFQEPG LKGPLWEEVS ARMAAAGYGG RSAKRCKEKW  60
ENINKYFRKA KESGKKRPAH AKTCPYFDEL DRLYSRSGHG SGASSGAGNT SAKATANAIA  120
TADDAANKAS SELLDAVVKY PTDTHYGPPP GFPNDGKEDG AAQHDGEGDV DMGRASGRAG  180
EDHDDEAGQS HGHDDDDDH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578661e-147AK357866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063K18.
GenBankAK3690251e-147AK369025.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083O21.
GenBankAK3742711e-147AK374271.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3059B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151906.11e-114trihelix transcription factor GTL1-like
SwissprotQ391173e-38TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3B6NHC01e-138A0A3B6NHC0_WHEAT; Uncharacterized protein
TrEMBLA0A3B6NJI11e-139A0A3B6NJI1_WHEAT; Uncharacterized protein
STRINGTraes_6AS_52AE4A6E2.11e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-39Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]