PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G459200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 567aa    MW: 59950.3 Da    PI: 4.9031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G459200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.71.4e-911255181373
                GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlarsvselykalppsetsekn....sseelaa 80 
                         l +lL+++Aea+s   ++ ela+ +L rl++++s +gd     +m+Rlaa+ft AL+  l +s +   +  ++ ++s+ +      ++l+a
  Sevir.9G459200.1.p 125 LLHLLMAAAEALSGphKSRELARVILVRLKQMVSHTGDsaavsNMERLAAHFTDALQGLLDGSHPAGGAGRQAAAASHGHhhqhAGDVLTA 215
                         579**********8557777*****************9888888******************887655444433333322334489999** PP

                GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfA 169
                         +++++++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v++   g +++++e g+rLa fA
  Sevir.9G459200.1.p 216 FQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVSRGGGGGARAVQEAGRRLAAFA 306
                         ********************************************************777799*********7777**************** PP

                GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.......s 252
                         +++g pf+f     ++ e +++ + r+ +gE+l+ n+vl+           +    ++L  + +l +kvv+vve++    + +        
  Sevir.9G459200.1.p 307 ASIGQPFSFGQCRLDSDERFRPATVRMVKGETLVANCVLNQAAATTTIRRPTGSVASFLAGMATLGAKVVTVVEEDQGEpE-KddeeaggG 396
                         ***********9999************************877776443333347889******************965522.224566669 PP

                GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl.ekWrerleeaGFkpvplsekaakqaklllr 342
                         F++rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + ++   + e + + W e+++  GF++vpls ++ +qa+lll 
  Sevir.9G459200.1.p 397 FVARFMEELHRYSAVWDSLEAGFPTQSRVRGLVERAILAPNIAGAVSRAYRAVDGDGEAArAGWGEWMRGNGFRAVPLSCFNHSQARLLLG 487
                         ***************************************************988777765157**************************** PP

                GRAS 343 kvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                          ++ dgy++ee s + +vlgWk r+L+s+S+W
  Sevir.9G459200.1.p 488 LFN-DGYTMEETSpNRIVLGWKARRLLSASVW 518
                         ***.******88615667************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.22999499IPR005202Transcription factor GRAS
PfamPF035145.0E-89125518IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDVTMDDVAG DLEFSGCSST TTSSSSPSLD DGMGMYAWNG LSPVADWGSF YPDDGGQDLH  60
GLIESMLCDD TLVGAADLHP AMFPDEVYCC SNGSAPSSTT TTNPGTPVND GDAAQGDCPE  120
KGLRLLHLLM AAAEALSGPH KSRELARVIL VRLKQMVSHT GDSAAVSNME RLAAHFTDAL  180
QGLLDGSHPA GGAGRQAAAA SHGHHHQHAG DVLTAFQMLQ DMSPYMKFGH FTANQAILEA  240
VAGDRRVHVV DYDIAEGVQW ASLMQAMISR PDGVPPPHLR ITAVSRGGGG GARAVQEAGR  300
RLAAFAASIG QPFSFGQCRL DSDERFRPAT VRMVKGETLV ANCVLNQAAA TTTIRRPTGS  360
VASFLAGMAT LGAKVVTVVE EDQGEPEKDD EEAGGGFVAR FMEELHRYSA VWDSLEAGFP  420
TQSRVRGLVE RAILAPNIAG AVSRAYRAVD GDGEAARAGW GEWMRGNGFR AVPLSCFNHS  480
QARLLLGLFN DGYTMEETSP NRIVLGWKAR RLLSASVWAP PPMSMPSSPA EGAFQPVGIA  540
PASGGVDRME FDYIDSFLVE PAYALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-5513352026379Protein SCARECROW
5b3h_D7e-5513352026379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G459200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432290.0AC243229.1 Panicum virgatum clone PV_ABa011-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679288.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-159NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLK4AM850.0K4AM85_SETIT; Uncharacterized protein
STRINGSi040022m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-94GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]